CBN00506 (Caenorhabditis brenneri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CBN00506 T082969_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-48
M00614_2.00 		Caenorhabditis elegans
HCCGTTAB
VTAACGGD		 PBM
Narasimhan et al.(2015)
pTH9155 		0.811 0.971
ovo
M03669_2.00 		Drosophila melanogaster
DNMCCGTTA
TAACGGKNH		 SELEX
Nitta et al.(2015)
ovo_1 		0.790 0.812
ovo
M06064_2.00 		Drosophila melanogaster
CHGTTAHW
WDTAACDG		 B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028 		0.790 0.812
ovo
M06065_2.00 		Drosophila melanogaster
RGTHCCGTTAT
ATAACGGDACY		 B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028 		0.790 0.812
ovo
M06066_2.00 		Drosophila melanogaster
DDTMCCGTTABNYN
NRNVTAACGGKAHH		 B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028 		0.790 0.812
ovo
M02671_2.00 		Drosophila melanogaster
DCNGTTWSD
HSWAACNGH		 SELEX
Mathelier et al.(2014)
MA0126.1 		0.790 0.812
ovo
M09662_2.00 		Drosophila melanogaster
DCNGTTAMWNNDV
BHNNWKTAACNGH		 Misc
Kulakovskiy et al.(2009)
ovo 		0.790 0.812
ovo
M10373_2.00 		Drosophila melanogaster
NNNDCNGTTWSDDNN
NNHHSWAACNGHNNN		 Transfac
Matys et al.(2006)
I$OVO_01 		0.790 0.812
ovo
M10374_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$OVO_Q6 		0.790 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN00506 C2H2 ZF 133 155
CBN00506 C2H2 ZF 161 183
CBN00506 C2H2 ZF 189 212

Links

Other C2H2 ZF family TFs
Other Caenorhabditis brenneri TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL017521 Aedes aegypti AAEL017521 I 0.794
AARA001055 Anopheles arabiensis AARA001055 I 0.794
AATE002741 Anopheles atroparvus AATE002741 I 0.794
ACHR004136 Anopheles christyi ACHR004136 I 0.794
ACUA027175 Anopheles culicifacies ACUA027175 I 0.794
ADAC004491 Anopheles darlingi ADAC004491 I 0.794
ADIR001008 Anopheles dirus ADIR001008 I 0.794
AFUN010393 Anopheles funestus AFUN010393 I 0.794
AGAP000114 Anopheles gambiae AGAP000114 I 0.794
AMEC022552 Anopheles melas AMEC022552 I 0.794
AMEM014020 Anopheles merus AMEM014020 I 0.794
ASIS014406 Anopheles sinensis ASIS014406 I 0.794
ASTEI07557 Anopheles stephensi ASTEI07557 I 0.794
Bm3814 Brugia malayi Bm3814 I 0.804
BTMF_0001741201 Brugia timori BTMF_0001741201 I 0.804
CBG09216 Caenorhabditis briggsae CBG09216 I 0.811
CJA03277 Caenorhabditis japonica CJA03277 I 0.811
CJA37604 Caenorhabditis japonica CJA37604 I 0.811
CPIJ018505 Culex quinquefasciatus CPIJ018505 I 0.794
CpipJ_CPIJ018505 Culex pipiens CpipJ_CPIJ018505 I 0.794
CRE25436 Caenorhabditis remanei CRE25436 I 0.811
HCOI01936300 Haemonchus contortus HCOI01936300 I 0.808
HMEL006827 Heliconius melpomene HMEL006827 I 0.794
ISCW013547 Ixodes scapularis ISCW013547 I 0.790
LCUP004963 Lucilia cuprina LCUP004963 I 0.794
LDEC009536 Leptinotarsa decemlineata LDEC009536 I 0.794
MDOA012259 Musca domestica MDOA012259 I 0.774
NECAME_03083 Necator americanus NECAME_03083 I 0.804
PPAI008669 Phlebotomus papatasi PPAI008669 I 0.794
TC008099 Tribolium castaneum TC008099 I 0.794
TELCIR_07985 Teladorsagia circumcincta TELCIR_07985 I 0.808
tetur12g02740 Tetranychus urticae tetur12g02740 I 0.774
tetur12g02760 Tetranychus urticae tetur12g02760 I 0.774
tetur12g02810 Tetranychus urticae tetur12g02810 I 0.774
lin-48 Caenorhabditis elegans WBGene00003033 D 0.811