ENSLACG00000017707 (Latimeria chalumnae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLACG00000017707 T097167_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.756 0.895
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.756 0.895
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.756 0.895
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.756 0.895
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.756 0.895
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.756 0.895
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.756 0.895
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.756 0.895
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.756 0.895
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.756 0.895
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.756 0.895
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.756 0.895
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000020148 C2H2 ZF 117 139
ENSLACP00000020148 C2H2 ZF 148 170
ENSLACP00000020148 C2H2 ZF 174 196
ENSLACP00000020148 C2H2 ZF 202 224
ENSLACP00000020148 C2H2 ZF 230 251

Links

Other C2H2 ZF family TFs
Other Latimeria chalumnae TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00508 Capronia coronata A1O1_00508 N
A1O3_02218 Capronia epimyces A1O3_02218 N
A1O5_06404 Cladophialophora psammophila A1O5_06404 N
A1O7_00947 Cladophialophora yegresii A1O7_00947 N
A1O9_04299 Exophiala aquamarina A1O9_04299 N
EPUS_05124 Endocarpon pusillum EPUS_05124 N
G647_01011 Cladophialophora carrionii G647_01011 N
HMPREF1120_05917 Exophiala dermatitidis HMPREF1120_05917 N
HMPREF1541_05921 Cyphellophora europaea HMPREF1541_05921 N
PV04_01059 Capronia semiimmersa PV04_01059 N
PV05_11497 Exophiala xenobiotica PV05_11497 N
PV06_03096 Exophiala oligosperma PV06_03096 N
PV07_01947 Cladophialophora immunda PV07_01947 N
PV08_05752 Exophiala spinifera PV08_05752 N
PV10_07193 Exophiala mesophila PV10_07193 N
PV11_08485 Exophiala sideris PV11_08485 N
Z517_07917 Fonsecaea pedrosoi Z517_07917 N
Z519_10637 Cladophialophora bantiana Z519_10637 N