GLIS1 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000000792 T097204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS1
M02911_2.00 		Homo sapiens
MGACCCCCCACGWHGN
NCDWCGTGGGGGGTCK		 SELEX
Jolma et al.(2013)
GLIS1_1 		0.827 1.000
GLIS1
M04564_2.00 		Homo sapiens
BMCCCCCCRCVDHSH
DSDHBGYGGGGGGKV		 SELEX
Yin et al.(2017)
GLIS1_eDBD_HT-SELEX 		0.827 1.000
GLIS1
M08345_2.00 		Homo sapiens
SNSYSYRGGRGGBV
BVCCYCCYRSRSNS		 ChIP-seq
Schmitges et al.(2016)
Q8NBF1.MEME 		0.827 1.000
GLIS1
M04565_2.00 		Homo sapiens
DCWHNGTGGGGGGTV
BACCCCCCACNDWGH		 SELEX
Yin et al.(2017)
GLIS1_eDBD_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000000661 C2H2 ZF 412 439
ENSLAFP00000000661 C2H2 ZF 446 469
ENSLAFP00000000661 C2H2 ZF 475 499
ENSLAFP00000000661 C2H2 ZF 505 529

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N
30099.m001671 Ricinus communis 30099.m001671 N
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N
cassava41915.m1 Manihot esculenta cassava41915.m1 N
Ca_07607 Cicer arietinum Ca_07607 N
Ca_26354 Cicer arietinum Ca_26354 N
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N
Cla010744 Citrullus lanatus Cla010744 N
Cucsa.342610 Cucumis sativus Cucsa.342610 N
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I
GLYMA10G40060 Glycine max GLYMA10G40060 N
GLYMA20G27350 Glycine max GLYMA20G27350 N
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N
Lus10030824.g Linum usitatissimum Lus10030824.g N
MDP0000168914 Malus domestica MDP0000168914 N
mgf017842m Mimulus guttatus mgf017842m N
mgf018184m Mimulus guttatus mgf018184m N
mgf018529m Mimulus guttatus mgf018529m N
mgf020533m Mimulus guttatus mgf020533m N
mgf020939m Mimulus guttatus mgf020939m N
mgf021403m Mimulus guttatus mgf021403m N
mgf022403m Mimulus guttatus mgf022403m N
mgf023207m Mimulus guttatus mgf023207m N
mgf024307m Mimulus guttatus mgf024307m N
mgf024490m Mimulus guttatus mgf024490m N
MTR_3g080940 Medicago truncatula MTR_3g080940 N
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N
Pm021070 Prunus mume Pm021070 N
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N