GSMUA_Achr5G01170_001 (Musa acuminata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GSMUA_Achr5G01170_001 T118704_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.932
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.932
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P01170_001 C2H2 ZF 199 221
GSMUA_Achr5P01170_001 C2H2 ZF 220 247

Links

Other C2H2 ZF family TFs
Other Musa acuminata TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034716 Oryza indica BGIOSGA034716 N 0.000
F775_26964 Aegilops tauschii F775_26964 N 0.000
GRMZM2G018436 Zea mays GRMZM2G018436 N 0.000
MLOC_5832 Hordeum vulgare MLOC_5832 N 0.000
MTR_7g085260 Medicago truncatula MTR_7g085260 I 0.000
OBART11G01610 Oryza barthii OBART11G01610 N 0.000
OGLUM11G01340 Oryza glumaepatula OGLUM11G01340 N 0.000
OLONG_028263 Oryza longistaminata OLONG_028263 N 0.000
OPUNC11G01340 Oryza punctata OPUNC11G01340 N 0.000
Pavir.J21394 Panicum virgatum Pavir.J21394 I 0.000
Pavir.J39049 Panicum virgatum Pavir.J39049 I 0.000
Sb05g001590 Sorghum bicolor Sb05g001590 N 0.000
Si010417m.g Setaria italica Si010417m.g N 0.000
Traes_5BL_420974D47 Triticum aestivum Traes_5BL_420974D47 N 0.000
TRIUR3_14541 Triticum urartu TRIUR3_14541 N 0.000