PGSC0003DMG400026081 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400026081 T125839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.774 0.889
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.774 0.889
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400067091 C2H2 ZF 269 291
PGSC0003DMT400067091 C2H2 ZF 290 321
PGSC0003DMT400067092 C2H2 ZF 269 291
PGSC0003DMT400067092 C2H2 ZF 290 321
PGSC0003DMT400067093 C2H2 ZF 269 291
PGSC0003DMT400067093 C2H2 ZF 290 321

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.774
Bo8g027000 Brassica oleracea Bo8g027000 I 0.774
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.774
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.774
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.774
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.793
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.774
Ca_04300 Cicer arietinum Ca_04300 I 0.774
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.774
Cla016623 Citrullus lanatus Cla016623 I 0.768
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.768
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.774
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.774
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.774
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.774
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.774
MDP0000141403 Malus domestica MDP0000141403 I 0.774
MDP0000199559 Malus domestica MDP0000199559 I 0.774
MDP0000551046 Malus domestica MDP0000551046 I 0.774
MDP0000807856 Malus domestica MDP0000807856 I 0.774
mgf000060m Mimulus guttatus mgf000060m I 0.774
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.774
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.774
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.774
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.784
PK23301.1 Cannabis sativa PK23301.1 I 0.774
Pm022201 Prunus mume Pm022201 I 0.774
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.774
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.827
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.784
TCM_036719 Theobroma cacao TCM_036719 I 0.774
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.774
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.774