CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Alligator_sinensis_CCG004454.1 *(Alligator sinensis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Alligator_sinensis_CCG004454.1	T133076_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Glis2 M00129_2.00	Mus musculus	NKACCCCYYNN	NNRRGGGGTMN	PBM Badis et al.(2009) Glis2_1757	0.811	0.986
GLIS2 M02887_2.00	Homo sapiens	KACCCCCCRCRDHG	CDHYGYGGGGGGTM	SELEX Jolma et al.(2013) GLIS2_1	0.811	0.971
GLIS2 M04449_2.00	Homo sapiens	RCCCCCCRCRWHGH	DCDWYGYGGGGGGY	SELEX Yin et al.(2017) GLIS2_eDBD_HT-SELEX	0.811	0.971
GLIS2 M04450_2.00	Homo sapiens	DCWHYGYDGGGGGT	ACCCCCHRCRDWGH	SELEX Yin et al.(2017) GLIS2_eDBD_Methyl-HT-SELEX	0.811	0.971
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Alligator_sinensis_CCG004454.1	C2H2 ZF	238	260	HRCPTCNKSFSRLENLKIHNRSH
Alligator_sinensis_CCG004454.1	C2H2 ZF	266	290	YICPYEGCNKRYSNSSDRFKHTRTH
Alligator_sinensis_CCG004454.1	C2H2 ZF	296	320	YYCKMPGCHKRYTDPSSLRKHIKAH

Links
Other C2H2 ZF family TFs
Other *Alligator sinensis* TFs