Alligator_sinensis_CCG020881.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG020881.1 T133450_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB42
M08351_2.00 		Homo sapiens
MRCAKCTGS
SCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
B2RXF5_2-4.RCADE 		0.773 0.899
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020881.1 C2H2 ZF 345 367
Alligator_sinensis_CCG020881.1 C2H2 ZF 386 407
Alligator_sinensis_CCG020881.1 C2H2 ZF 413 435
Alligator_sinensis_CCG020881.1 C2H2 ZF 443 464

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011644 Calypte anna Aan_R011644 I 0.772
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.772
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.772
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I 0.770
ZBTB42 Anolis carolinensis ENSACAG00000011451 I 0.814
ENSAMEG00000007755 Ailuropoda melanoleuca ENSAMEG00000007755 I 0.760
ENSCSAG00000019588 Chlorocebus sabaeus ENSCSAG00000019588 I 0.773
zbtb42 Danio rerio ENSDARG00000102761 I 0.794
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.772
ZBTB42 Homo sapiens ENSG00000179627 D 0.773
zbtb42 Gasterosteus aculeatus ENSGACG00000006297 I 0.793
ZBTB42 Gallus gallus ENSGALG00000023025 I 0.827
ENSLOCG00000012759 Lepisosteus oculatus ENSLOCG00000012759 I 0.795
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I 0.827
ZBTB42 Monodelphis domestica ENSMODG00000013701 I 0.812
ENSONIG00000012149 Oreochromis niloticus ENSONIG00000012149 I 0.798
zbtb42 Oryzias latipes ENSORLG00000017008 I 0.798
ENSP00000409107 Macaca fascicularis ENSP00000409107 I 0.773
ENSPFOG00000010298 Poecilia formosa ENSPFOG00000010298 I 0.798
ENSPSIG00000000487 Pelodiscus sinensis ENSPSIG00000000487 I 0.769
ZBTB42 Pan troglodytes ENSPTRG00000040287 I 0.773
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I 0.812
zbtb42 Tetraodon nigroviridis ENSTNIG00000000917 I 0.798
zbtb42 Takifugu rubripes ENSTRUG00000013592 I 0.798
ENSXMAG00000006703 Xiphophorus maculatus ENSXMAG00000006703 I 0.798
Gfo_R006792 Geospiza fortis Gfo_R006792 I 0.772
Ogr11588 Ophisaurus gracilis Ogr11588 I 0.824
Pvit_02527 Pogona vitticeps Pvit_02527 I 0.800
znf238.2 Xenopus tropicalis XB-GENE-1219066 I 0.812
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.757