Brh_R000160 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R000160 T133491_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.827 1.000
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.827 1.000
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.827 1.000
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.827 1.000
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.827 1.000
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.827 1.000
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.827 1.000
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.827 1.000
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R000160 C2H2 ZF 370 392
Brh_R000160 C2H2 ZF 411 432
Brh_R000160 C2H2 ZF 438 460
Brh_R000160 C2H2 ZF 466 489

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA012660 Oryza indica BGIOSGA012660 N
BRADI1G61810 Brachypodium distachyon BRADI1G61810 N
F775_14666 Aegilops tauschii F775_14666 N
GRMZM2G157716 Zea mays GRMZM2G157716 N
GRMZM2G168665 Zea mays GRMZM2G168665 N
LPERR03G15750 Leersia perrieri LPERR03G15750 N
MLOC_6239 Hordeum vulgare MLOC_6239 N
OBART03G18090 Oryza barthii OBART03G18090 N
OGLUM03G18670 Oryza glumaepatula OGLUM03G18670 N
OMERI03G16300 Oryza meridionalis OMERI03G16300 N
ONIVA03G19010 Oryza nivara ONIVA03G19010 N
ORUFI03G18850 Oryza rufipogon ORUFI03G18850 N
OS03G0360600 Oryza sativa OS03G0360600 N
Si036723m.g Setaria italica Si036723m.g N
Traes_1AS_74E6A4EC7 Triticum aestivum Traes_1AS_74E6A4EC7 N
Traes_4BS_1729D563E Triticum aestivum Traes_4BS_1729D563E N
Traes_4BS_4D4146347 Triticum aestivum Traes_4BS_4D4146347 N
Traes_4BS_AB9EE132F Triticum aestivum Traes_4BS_AB9EE132F N
Traes_4DL_54206FBF3 Triticum aestivum Traes_4DL_54206FBF3 N
Traes_4DL_54206FBF31 Triticum aestivum Traes_4DL_54206FBF31 N
TRIUR3_32728 Triticum urartu TRIUR3_32728 N