CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gfo_R012611 *(Geospiza fortis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Gfo_R012611	T135846_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ZNF521 M10318_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ZNF521_03	0.778	0.949
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gfo_R012611	C2H2 ZF	107	129	YPCQFCDKSFSRLSYLKHHEQSH
Gfo_R012611	C2H2 ZF	135	157	FKCTYCSRLFKHKRSRDRHIKLH
Gfo_R012611	C2H2 ZF	163	185	YHCSECDAAFSRSDHLKIHLKTH
Gfo_R012611	C2H2 ZF	191	213	YKCAICRRGFLSSSSLHGHMQVH
Gfo_R012611	C2H2 ZF	235	258	QKCSQCEEGFDFPEDLQKHIAECH
Gfo_R012611	C2H2 ZF	270	293	LQCVYCHELFVEETSLVNHMEQAH
Gfo_R012611	C2H2 ZF	300	321	SCSICSESFHTVEELYSHMDSH
Gfo_R012611	C2H2 ZF	426	449	HICQYCLEVLPSLYNLNEHLKQVH
Gfo_R012611	C2H2 ZF	466	489	YQCNFCSEVFNDLNTLQEHIRCSH
Gfo_R012611	C2H2 ZF	502	525	FFCPHCYMGFLTDSSLEEHIRQVH
Gfo_R012611	C2H2 ZF	549	574	YSCSYCTNSPIFNSVLKLNKHIKENH
Gfo_R012611	C2H2 ZF	623	645	YICNQCGAKYTSLDGFQTHLKTH
Gfo_R012611	C2H2 ZF	653	675	LTCPQCNKEFPNQESLLKHVTIH
Gfo_R012611	C2H2 ZF	683	706	YICESCDKQFTSVDDLQKHLLDMH
Gfo_R012611	C2H2 ZF	711	734	FRCTLCQEVFDSKVSIQLHLAVKH
Gfo_R012611	C2H2 ZF	741	764	YRCTSCNWDFRNETDLQLHVKHNH
Gfo_R012611	C2H2 ZF	798	821	YNCKFCSKAFHAIILLEKHLREKH
Gfo_R012611	C2H2 ZF	875	898	YGCDICGAAYTMETLLQNHQLRDH
Gfo_R012611	C2H2 ZF	919	941	YKCNVCSRTFFSENGLREHMQTH
Gfo_R012611	C2H2 ZF	948	970	YMCPICGERFPSLLTLTEHKVTH
Gfo_R012611	C2H2 ZF	1214	1236	HECKLCNQTFDSPAKLQCHLIEH
Gfo_R012611	C2H2 ZF	1245	1268	FKCPVCFTVFVQANKLQQHIFSAH

Links
Other C2H2 ZF family TFs
Other *Geospiza fortis* TFs