cassava22193.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava22193.valid.m1 T137840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.807 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.807 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22193.valid.m1 C2H2 ZF 251 273
cassava22193.valid.m1 C2H2 ZF 272 303

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA010780 Anopheles arabiensis AARA010780 I 0.000
ACEP20052 Atta cephalotes ACEP20052 N 0.000
ACHR006597 Anopheles christyi ACHR006597 N 0.000
ADIR011363 Anopheles dirus ADIR011363 I 0.000
AEPI004836 Anopheles epiroticus AEPI004836 N 0.000
AFUN008227 Anopheles funestus AFUN008227 I 0.000
AMAM006507 Anopheles maculatus AMAM006507 N 0.000
AQUA004183 Anopheles quadriannulatus AQUA004183 N 0.000
CPIJ009205 Culex quinquefasciatus CPIJ009205 N 0.000
CpipJ_CPIJ009205 Culex pipiens CpipJ_CPIJ009205 N 0.000
PAX5 Homo sapiens ENSG00000196092 D 0.000
KGM_19741 Danaus plexippus KGM_19741 I 0.000
LLOJ000107 Lutzomyia longipalpis LLOJ000107 N 0.000
MESCA000012 Megaselia scalaris MESCA000012 I 0.000
PPAI001293 Phlebotomus papatasi PPAI001293 I 0.000
YQE_05417 Dendroctonus ponderosae YQE_05417 I 0.000