CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ocbimv22028511m.g *(Octopus bimaculoides)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Ocbimv22028511m.g	T141719_2.00	JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SP9 M04645_2.00	Homo sapiens	VMCMCGCCCMYH	DRKGGGCGKGKB	SELEX Yin et al.(2017) SP9_eDBD_HT-SELEX	0.764	0.855
SP9 M04646_2.00	Homo sapiens	RYCACGCCCMYH	DRKGGGCGTGRY	SELEX Yin et al.(2017) SP9_eDBD_Methyl-HT-SELEX	0.764	0.855
SP8 M02898_2.00	Homo sapiens	VMCACBCCCMCH	DGKGGGVGTGKB	SELEX Jolma et al.(2013) SP8_1	0.764	0.841
SP8 M04517_2.00	Homo sapiens	NMCMCGCCCMYH	DRKGGGCGKGKN	SELEX Yin et al.(2017) SP8_eDBD_HT-SELEX	0.764	0.841
SP8 M04518_2.00	Homo sapiens	RHCACGCCCMYH	DRKGGGCGTGDY	SELEX Yin et al.(2017) SP8_eDBD_Methyl-HT-SELEX	0.764	0.841
Sp7 M09009_2.00	Mus musculus	VHAVCCTRTAATTW	WAATTAYAGGBTDB	Misc Kulakovskiy et al.(2013) SP7_MOUSE.H11MO.0.A	0.757	0.812
SP7 M10258_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSX_Q3	0.757	0.812
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ocbimv22028511m.p	C2H2 ZF	297	321	HNCHVPGCGKVYSKSSHLKAHLRWH
Ocbimv22028511m.p	C2H2 ZF	327	351	FVCNWLFCGKRFSRSDELQRHFRTH
Ocbimv22028511m.p	C2H2 ZF	357	379	FTCPMCNRRFTRSDHLSKHIKIH

Links
Other C2H2 ZF family TFs
Other *Octopus bimaculoides* TFs