Cagra.12398s0002 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.12398s0002 T142642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 1.000
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12398s0002.1.p C2H2 ZF 347 369
Cagra.12398s0002.1.p C2H2 ZF 368 399

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27763.m000042 Ricinus communis 27763.m000042 I 0.000
MYB75 Arabidopsis thaliana AT1G56650 I 0.000
MYB114 Arabidopsis thaliana AT1G66380 I 0.000
MYB90 Arabidopsis thaliana AT1G66390 I 0.000
Bo6g099880 Brassica oleracea Bo6g099880 I 0.000
Bo6g100940 Brassica oleracea Bo6g100940 I 0.000
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.000
Bra001917 Brassica rapa Bra001917 I 0.000
Bra004162 Brassica rapa Bra004162 I 0.000
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.000
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.000
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.000
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.000
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.000
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.000
mgf024902m Mimulus guttatus mgf024902m N 0.000
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.000
PK05760.1 Cannabis sativa PK05760.1 I 0.000
PK17827.1 Cannabis sativa PK17827.1 I 0.000
Pm029442 Prunus mume Pm029442 I 0.000
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.000
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.000
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.000
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.000
TCM_019192 Theobroma cacao TCM_019192 I 0.000
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.000