Ciclev10000850m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10000850m.g T142753_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000850m C2H2 ZF 358 380
Ciclev10000850m C2H2 ZF 379 410

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
20155_YOR140W Saccharomyces mikatae 20155_YOR140W I 0.000
23912_Multiple Saccharomyces bayanus 23912_Multiple I 0.000
AACERI_AaceriAFR136C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR136C I 0.000
AGOS_AFR136C Ashbya gossypii AGOS_AFR136C I 0.000
BN7_3380 Wickerhamomyces ciferrii BN7_3380 I 0.000
CAGL0I07183g Candida glabrata CAGL0I07183g I 0.000
CANTEDRAFT_132848 Candida tenuis CANTEDRAFT_132848 I 0.000
CLUG_03610 Candida lusitaniae CLUG_03610 I 0.000
CLUG_03610 Clavispora lusitaniae CLUG_03610 I 0.000
CORT_0D05240 Candida orthopsilosis CORT_0D05240 I 0.000
CTRG_06093 Candida tropicalis CTRG_06093 I 0.000
DEHA2G10560g Debaryomyces hansenii DEHA2G10560g I 0.000
Ecym_2312 Eremothecium cymbalariae Ecym_2312 I 0.000
estExt_fgenesh1_pg.C_chr_6.10474 Pichia stipitis estExt_fgenesh1_pg.C_chr_6.10474 I 0.000
G210_0510 Candida maltosa G210_0510 I 0.000
GNLVRS01_PISO0E07748g Millerozyma farinosa GNLVRS01_PISO0E07748g I 0.000
GNLVRS01_PISO0F09091g Millerozyma farinosa GNLVRS01_PISO0F09091g I 0.000
HPODL_00954 Ogataea parapolymorpha HPODL_00954 I 0.000
JL09_g4519 Pichia kudriavzevii JL09_g4519 I 0.000
KLLA0_E03191g Kluyveromyces lactis KLLA0_E03191g I 0.000
KLTH0F14982g Lachancea thermotolerans KLTH0F14982g I 0.000
KLTH0F14982g Kluyveromyces thermotolerans KLTH0F14982g I 0.000
KNAG_0B04040 Kazachstania naganishii KNAG_0B04040 I 0.000
KUCA_T00005449001 Kuraishia capsulata KUCA_T00005449001 I 0.000
Kwal_21254 Kluyveromyces waltii Kwal_21254 I 0.000
LALA0_S01e07668g Lachancea lanzarotensis LALA0_S01e07668g I 0.000
NCAS_0H02280 Naumovozyma castellii NCAS_0H02280 I 0.000
NDAI_0C01380 Naumovozyma dairenensis NDAI_0C01380 I 0.000
PAS_chr3_0115 Komagataella pastoris PAS_chr3_0115 I 0.000
PGUG_04779 Candida guilliermondii PGUG_04779 I 0.000
PGUG_04779 Meyerozyma guilliermondii PGUG_04779 I 0.000
PICST_68146 Scheffersomyces stipitis PICST_68146 I 0.000
SAKL0G03586g Lachancea kluyveri SAKL0G03586g I 0.000
Scas_Contig714.29 Saccharomyces castellii Scas_Contig714.29 I 0.000
SKUD_183302 Saccharomyces kudriavzevii SKUD_183302 I 0.000
SNOG_08309 Phaeosphaeria nodorum SNOG_08309 I 0.000
TDEL_0A03400 Torulaspora delbrueckii TDEL_0A03400 I 0.000
TPHA_0H01130 Tetrapisispora phaffii TPHA_0H01130 I 0.000
XP_002492324.1 Pichia pastoris XP_002492324.1 I 0.000
SFL1 Saccharomyces cerevisiae YOR140W D 0.000
ZBAI_09477 Zygosaccharomyces bailii ZBAI_09477 I 0.000
ZYRO0D11286g Zygosaccharomyces rouxii ZYRO0D11286g I 0.000