MDP0000551046 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000551046 T143227_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.956
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000551046 C2H2 ZF 434 456
MDP0000551046 C2H2 ZF 455 486

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.000
BHLH2 Arabidopsis thaliana AT1G63650 N 0.000
TT8 Arabidopsis thaliana AT4G09820 I 0.000
BHLH127 Arabidopsis thaliana AT4G28815 N 0.000
GL3 Arabidopsis thaliana AT5G41315 I 0.000
Bo4g141990 Brassica oleracea Bo4g141990 I 0.000
Bo9g029230 Brassica oleracea Bo9g029230 N 0.000
Bo9g086910 Brassica oleracea Bo9g086910 N 0.000
Bo9g086920 Brassica oleracea Bo9g086920 N 0.000
Bostr.25463s0338 Boechera stricta Bostr.25463s0338 I 0.000
Bostr.29223s0199 Boechera stricta Bostr.29223s0199 N 0.000
Bostr.7200s0145 Boechera stricta Bostr.7200s0145 I 0.000
Bra025508 Brassica rapa Bra025508 I 0.000
Bra027653 Brassica rapa Bra027653 N 0.000
Bra027796 Brassica rapa Bra027796 N 0.000
Bra037887 Brassica rapa Bra037887 N 0.000
Cagra.1664s0001 Capsella grandiflora Cagra.1664s0001 I 0.000
Cagra.2104s0007 Capsella grandiflora Cagra.2104s0007 N 0.000
Carubv10002462m.g Capsella rubella Carubv10002462m.g I 0.000
Carubv10004345m.g Capsella rubella Carubv10004345m.g I 0.000
Carubv10019965m.g Capsella rubella Carubv10019965m.g N 0.000
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.000
Ca_05750 Cicer arietinum Ca_05750 I 0.000
evm.TU.supercontig_537.2 Carica papaya evm.TU.supercontig_537.2 N 0.000
EGL3 Arabidopsis lyrata fgenesh2_kg.2__120__AT1G63650.2 N 0.000
TT8 Arabidopsis lyrata fgenesh2_kg.6__2968__AT4G09820.1 I 0.000
gene32494-v1.0-hybrid Fragaria vesca gene32494-v1.0-hybrid I 0.000
GLYMA05G37770 Glycine max GLYMA05G37770 N 0.000
GLYMA08G01810 Glycine max GLYMA08G01810 I 0.000
Gorai.007G023500 Gossypium raimondii Gorai.007G023500 N 0.000
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.000
LjSGA_008146.1 Lotus japonicus LjSGA_008146.1 I 0.000
mgf005803m Mimulus guttatus mgf005803m I 0.000
MTR_8g098275 Medicago truncatula MTR_8g098275 I 0.000
PK03576.1 Cannabis sativa PK03576.1 D 0.000
Pm023805 Prunus mume Pm023805 I 0.000
POPTR_0003s12810 Populus trichocarpa POPTR_0003s12810 I 0.000
PRUPE_ppa002762mg Prunus persica PRUPE_ppa002762mg I 0.000
SapurV1A.0612s0160 Salix purpurea SapurV1A.0612s0160 N 0.000
Sb06g016380 Sorghum bicolor Sb06g016380 N 0.000
TCM_016261 Theobroma cacao TCM_016261 I 0.000
Thhalv10023356m.g Eutrema salsugineum Thhalv10023356m.g N 0.000
Thhalv10027709m.g Eutrema salsugineum Thhalv10027709m.g I 0.000
VIT_02s0025g03450 Vitis vinifera VIT_02s0025g03450 N 0.000