orange1.1g009831m.g (Citrus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 orange1.1g009831m.g T143253_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g009831m C2H2 ZF 358 380
orange1.1g009831m C2H2 ZF 379 410
orange1.1g012364m C2H2 ZF 358 380
orange1.1g012364m C2H2 ZF 379 410

Links

Other C2H2 ZF family TFs
Other Citrus sinensis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA035910 Oryza indica BGIOSGA035910 N
F775_23986 Aegilops tauschii F775_23986 N
LPERR12G14660 Leersia perrieri LPERR12G14660 N
OBART12G17540 Oryza barthii OBART12G17540 N
OGLUM09G03810 Oryza glumaepatula OGLUM09G03810 N
OMERI12G12170 Oryza meridionalis OMERI12G12170 N
ONIVA03G41680 Oryza nivara ONIVA03G41680 N
OPUNC12G15840 Oryza punctata OPUNC12G15840 N
ORUFI08G04050 Oryza rufipogon ORUFI08G04050 N
ORUFI12G19420 Oryza rufipogon ORUFI12G19420 N
PRUPE_ppa015272mg Prunus persica PRUPE_ppa015272mg N
Si039078m.g Setaria italica Si039078m.g N