Pavir.Ba01662 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ba01662 T143313_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01662.1.p C2H2 ZF 12 34
Pavir.Ba01662.1.p C2H2 ZF 35 58
Pavir.Ba01662.2.p C2H2 ZF 12 34
Pavir.Ba01662.2.p C2H2 ZF 35 58
Pavir.Ba01662.3.p C2H2 ZF 12 34
Pavir.Ba01662.3.p C2H2 ZF 35 58
Pavir.Ba01662.4.p C2H2 ZF 12 34
Pavir.Ba01662.4.p C2H2 ZF 35 58
Pavir.Ba01662.5.p C2H2 ZF 12 34
Pavir.Ba01662.5.p C2H2 ZF 35 58

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SUF4 Arabidopsis thaliana AT1G30970 N 0.784
Bo2g121020 Brassica oleracea Bo2g121020 N 0.777
Bo5g065610 Brassica oleracea Bo5g065610 N 0.784
Bostr.15697s0404 Boechera stricta Bostr.15697s0404 N 0.784
Bra023153 Brassica rapa Bra023153 N 0.784
Bra039880 Brassica rapa Bra039880 N 0.776
Cagra.1508s0093 Capsella grandiflora Cagra.1508s0093 N 0.784
SUF4 Arabidopsis lyrata fgenesh2_kg.1__3297__AT1G30970.1 N 0.784
GRMZM2G081812 Zea mays GRMZM2G081812 N 0.827
Pavir.J03264 Panicum virgatum Pavir.J03264 N 0.827
PK05604.1 Cannabis sativa PK05604.1 N 0.803
Sb02g032810 Sorghum bicolor Sb02g032810 N 0.807
Si030356m.g Setaria italica Si030356m.g N 0.827
Solyc02g032120.2 Solanum lycopersicum Solyc02g032120.2 N 0.791
Thhalv10008022m.g Eutrema salsugineum Thhalv10008022m.g N 0.784