Pavir.J06328 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J06328 T143407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.930
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06328.1.p C2H2 ZF 127 149
Pavir.J06328.1.p C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001230 Aedes aegypti AAEL001230 N 0.000
AARA002561 Anopheles arabiensis AARA002561 N 0.000
ACHR008455 Anopheles christyi ACHR008455 N 0.000
ACUA023712 Anopheles culicifacies ACUA023712 N 0.000
ADIR004650 Anopheles dirus ADIR004650 N 0.000
AFUN000252 Anopheles funestus AFUN000252 N 0.000
AGAP000875 Anopheles gambiae AGAP000875 N 0.000
AMEC011182 Anopheles melas AMEC011182 N 0.000
AMIN005800 Anopheles minimus AMIN005800 N 0.000
AQUA002448 Anopheles quadriannulatus AQUA002448 N 0.000
ASIS023610 Anopheles sinensis ASIS023610 N 0.000
ASTEI01189 Anopheles stephensi ASTEI01189 N 0.000
CapteG179381 Capitella teleta CapteG179381 N 0.000
CGI_10022679 Crassostrea gigas CGI_10022679 N 0.000
D917_04267 Trichinella nativa D917_04267 N 0.000
D918_01045 Trichuris suis D918_01045 N 0.000
ci-mytf Ciona intestinalis ENSCING00000007794 N 0.000
ST18 Callithrix jacchus ENSCJAG00000014630 N 0.000
ENSCSAVG00000009233 Ciona savignyi ENSCSAVG00000009233 N 0.000
MYT1L Echinops telfairi ENSETEG00000015771 N 0.000
ENSGMOG00000000679 Gadus morhua ENSGMOG00000000679 N 0.000
ENSMEUG00000001386 Macropus eugenii ENSMEUG00000001386 N 0.000
ENSPMAG00000001124 Petromyzon marinus ENSPMAG00000001124 N 0.000
MYT1L Pteropus vampyrus ENSPVAG00000001625 N 0.000
MYT1L Tetraodon nigroviridis ENSTNIG00000008296 N 0.000
MYT1 Takifugu rubripes ENSTRUG00000002124 N 0.000
CG43689 Drosophila melanogaster FBgn0263772 I 0.000
HMEL002385 Heliconius melpomene HMEL002385 N 0.000
Hsal_01303--XP_394358.3_APIME Harpegnathos saltator Hsal_01303--XP_394358.3_APIME N 0.000
MCINX013435 Melitaea cinxia MCINX013435 N 0.000
NV11201 Nasonia vitripennis NV11201 N 0.000
SINV15347 Solenopsis invicta SINV15347 N 0.000
tetur15g00740 Tetranychus urticae tetur15g00740 N 0.000
TMUE_s0020007600 Trichuris muris TMUE_s0020007600 N 0.000