prdm10 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-985864 T145714_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AAI68013 C2H2 ZF 559 581
AAI68013 C2H2 ZF 589 611
AAI68013 C2H2 ZF 617 639
AAI68013 C2H2 ZF 645 668
AAI68013 C2H2 ZF 673 695
AAI68013 C2H2 ZF 701 724
AAI68013 C2H2 ZF 756 779
AAI68013 C2H2 ZF 801 824
AAI68013 C2H2 ZF 863 886
B4F6U4 C2H2 ZF 559 581
B4F6U4 C2H2 ZF 589 611
B4F6U4 C2H2 ZF 617 639
B4F6U4 C2H2 ZF 645 668
B4F6U4 C2H2 ZF 673 695
B4F6U4 C2H2 ZF 701 724
B4F6U4 C2H2 ZF 756 779
B4F6U4 C2H2 ZF 801 824
B4F6U4 C2H2 ZF 863 886

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY41 Arabidopsis thaliana AT4G11070 I
Bostr.25463s0219 Boechera stricta Bostr.25463s0219 I
Cagra.3839s0004 Capsella grandiflora Cagra.3839s0004 I
Carubv10001458m.g Capsella rubella Carubv10001458m.g I
cassava42820.valid.m1 Manihot esculenta cassava42820.valid.m1 I
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I
estExt_fgenesh1_pg.C_840061 Physcomitrella patens estExt_fgenesh1_pg.C_840061 N
Eucgr.E00850 Eucalyptus grandis Eucgr.E00850 I
fgenesh1_pg.scaffold_195000041 Physcomitrella patens fgenesh1_pg.scaffold_195000041 N
fgenesh1_pg.scaffold_236000008 Physcomitrella patens fgenesh1_pg.scaffold_236000008 N
WRKY41 Arabidopsis lyrata fgenesh2_kg.6__3080__AT4G11070.1 I
Gorai.004G134600 Gossypium raimondii Gorai.004G134600 I
GSMUA_Achr4G15640_001 Musa acuminata GSMUA_Achr4G15640_001 I
Pavir.Ca02643 Panicum virgatum Pavir.Ca02643 I
POPTR_0001s10490 Populus trichocarpa POPTR_0001s10490 I
POPTR_0003s13840 Populus trichocarpa POPTR_0003s13840 I
SapurV1A.0237s0250 Salix purpurea SapurV1A.0237s0250 I
TCM_016426 Theobroma cacao TCM_016426 I
Thhalv10028794m.g Eutrema salsugineum Thhalv10028794m.g I