4088_Multiple (Saccharomyces paradoxus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 4088_Multiple T145981_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GIS1
M00019_2.00 		Saccharomyces cerevisiae
NCCCCTWDNN
NNHWAGGGGN		 PBM
Badis et al.(2008)
GIS1_4481 		0.827 1.000
GIS1
M07449_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0306.1 		0.827 1.000
GIS1
M08515_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 Misc
DeBoer et al.(2011)
YDR096W_562 		0.827 1.000
RPH1
M00025_2.00 		Saccharomyces cerevisiae
NNHCCCCTAAN
NTTAGGGGDNN		 PBM
Badis et al.(2008)
RPH1_4571 		0.816 0.911
RPH1
M01531_2.00 		Saccharomyces cerevisiae
YNMCCCCTWWWW
WWWWAGGGGKNR		 PBM
Zhu et al.(2009)
Rph1 		0.816 0.911
RPH1
M07455_2.00 		Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0372.1 		0.816 0.911
RPH1
M08522_2.00 		Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 Misc
DeBoer et al.(2011)
YER169W_547 		0.816 0.911
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
4088_Multiple C2H2 ZF 8 31
4088_Multiple C2H2 ZF 37 58

Links

Other C2H2 ZF family TFs
Other Saccharomyces paradoxus TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
3770_YDR096W Saccharomyces mikatae 3770_YDR096W I 0.827
4347_Multiple Saccharomyces bayanus 4347_Multiple I 0.827
6173_YER169W Saccharomyces mikatae 6173_YER169W I 0.792
6757_YER169W Saccharomyces paradoxus 6757_YER169W I 0.816
7085_YER169W Saccharomyces bayanus 7085_YER169W I 0.792
AACERI_AaceriAGR117C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR117C I 0.792
AGOS_AGR117C Ashbya gossypii AGOS_AGR117C I 0.792
CAGL0L11880g Candida glabrata CAGL0L11880g I 0.792
Ecym_3520 Eremothecium cymbalariae Ecym_3520 I 0.816
KAFR_0A02380 Kazachstania africana KAFR_0A02380 I 0.768
KAFR_0B02550 Kazachstania africana KAFR_0B02550 I 0.810
KLLA0_C17710g Kluyveromyces lactis KLLA0_C17710g I 0.792
KLTH0G14454g Lachancea thermotolerans KLTH0G14454g I 0.792
KLTH0G14454g Kluyveromyces thermotolerans KLTH0G14454g I 0.792
KNAG_0G01870 Kazachstania naganishii KNAG_0G01870 I 0.792
KNAG_0H03010 Kazachstania naganishii KNAG_0H03010 I 0.810
Kpol_1032p52 Vanderwaltozyma polyspora Kpol_1032p52 I 0.816
Kwal_23453 Kluyveromyces waltii Kwal_23453 I 0.792
LALA0_S07e07030g Lachancea lanzarotensis LALA0_S07e07030g I 0.792
NCAS_0B04840 Naumovozyma castellii NCAS_0B04840 I 0.792
NDAI_0B02250 Naumovozyma dairenensis NDAI_0B02250 I 0.792
SAKL0H17842g Lachancea kluyveri SAKL0H17842g I 0.792
Scas_Contig681.19 Saccharomyces castellii Scas_Contig681.19 I 0.792
SKUD_141701 Saccharomyces kudriavzevii SKUD_141701 I 0.827
SU7_0636 Saccharomyces arboricola SU7_0636 I 0.827
SU7_0955 Saccharomyces arboricola SU7_0955 I 0.792
TBLA_0E04210 Tetrapisispora blattae TBLA_0E04210 I 0.759
TBLA_0F03830 Tetrapisispora blattae TBLA_0F03830 I 0.792
TDEL_0A01300 Torulaspora delbrueckii TDEL_0A01300 I 0.816
TPHA_0A01940 Tetrapisispora phaffii TPHA_0A01940 I 0.810
GIS1 Saccharomyces cerevisiae YDR096W D 0.827
RPH1 Saccharomyces cerevisiae YER169W D 0.816
ZBAI_04846 Zygosaccharomyces bailii ZBAI_04846 I 0.792
ZBAI_06407 Zygosaccharomyces bailii ZBAI_06407 I 0.792
ZYRO0B11770g Zygosaccharomyces rouxii ZYRO0B11770g I 0.792