PDK_20s1338731g001 (Phoenix dactylifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PDK_20s1338731g001 T146560_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.768 0.844
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.768 0.844
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1338731g001 C2H2 ZF 335 361
PDK_20s1338731g001 C2H2 ZF 357 387

Links

Other C2H2 ZF family TFs
Other Phoenix dactylifera TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.774
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.774
STOP1 Arabidopsis thaliana AT1G34370 D 0.768
Bo8g027000 Brassica oleracea Bo8g027000 I 0.768
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.768
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.768
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.768
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.768
Ca_04300 Cicer arietinum Ca_04300 I 0.768
Cla016623 Citrullus lanatus Cla016623 I 0.762
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.762
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.768
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.768
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.768
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.768
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.768
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.768
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.768
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.763
MDP0000141403 Malus domestica MDP0000141403 I 0.768
MDP0000199559 Malus domestica MDP0000199559 I 0.768
MDP0000551046 Malus domestica MDP0000551046 I 0.768
MDP0000807856 Malus domestica MDP0000807856 I 0.768
mgf000060m Mimulus guttatus mgf000060m I 0.768
OB03G47410 Oryza brachyantha OB03G47410 I 0.763
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.763
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.763
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.768
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.768
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.768
PK23301.1 Cannabis sativa PK23301.1 I 0.768
Pm022201 Prunus mume Pm022201 I 0.768
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.768
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.768
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.768
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.768
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.763
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.812
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.762
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.812
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.762
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.782
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.782
Si036555m.g Setaria italica Si036555m.g I 0.763
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.768
TCM_036719 Theobroma cacao TCM_036719 I 0.768
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.768
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.768