CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PTRK_0000799900 *(Parastrongyloides trichosuri)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	PTRK_0000799900	T155741_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ref-2 M00621_2.00	Caenorhabditis elegans	CMYRSNGNBH	DVNCNSYRKG	PBM Narasimhan et al.(2015) pTH9089	0.779	0.761
opa M03668_2.00	Drosophila melanogaster	BVCCCCCCRYNGHB	VDCNRYGGGGGGBV	SELEX Nitta et al.(2015) opa_1	0.755	0.793
opa M05861_2.00	Drosophila melanogaster	VCCCCCCRYNGNK	MNCNRYGGGGGGB	SMiLE-seq Isakova et al.(2017) Opa	0.755	0.793
opa M06468_2.00	Drosophila melanogaster	GMCCCCCCGCDG	CHGCGGGGGGKC	B1H Mathelier et al.(2014) MA0456.1	0.755	0.793
opa M06062_2.00	Drosophila melanogaster	GMCCCCCCRCDG	CHGYGGGGGGKC	B1H Zhu et al.(2011) opa_NAR_FBgn0003002	0.755	0.793
opa M06063_2.00	Drosophila melanogaster	MKVMMCCCCMCYR	YRGKGGGGKKBMK	B1H Zhu et al.(2011) Opa_SANGER_5_FBgn0003002	0.755	0.793
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
PTRK_0000799900.1	C2H2 ZF	212	239	YVCHWKDCTRHGKAFKAKYKLVNHLRVH
PTRK_0000799900.1	C2H2 ZF	245	267	FLCERCGKLFARSENLKIHKRIH
PTRK_0000799900.1	C2H2 ZF	273	297	FRCGSIGCDRTFANSSDRKKHMHVH
PTRK_0000799900.1	C2H2 ZF	303	327	YFCRYNGCDKSYTHPSSLRKHMKAH

Links
Other C2H2 ZF family TFs
Other *Parastrongyloides trichosuri* TFs