SMUV_0000843501 (Syphacia muris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMUV_0000843501 T156445_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.781
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.781
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.781
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.781
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.761 0.772
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.761 0.772
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.761 0.772
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.761 0.772
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.760 0.781
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.760 0.781
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.760 0.781
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000843501-mRNA-1 C2H2 ZF 63 85
SMUV_0000843501-mRNA-1 C2H2 ZF 94 116
SMUV_0000843501-mRNA-1 C2H2 ZF 120 142
SMUV_0000843501-mRNA-1 C2H2 ZF 148 170
SMUV_0000843501-mRNA-1 C2H2 ZF 176 197

Links

Other C2H2 ZF family TFs
Other Syphacia muris TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N
29908.m006047 Ricinus communis 29908.m006047 N
30055.m001542 Ricinus communis 30055.m001542 N
30061.m000294 Ricinus communis 30061.m000294 N
30169.m006417 Ricinus communis 30169.m006417 N
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N
WIP6 Arabidopsis thaliana AT1G13290 N
WIP2 Arabidopsis thaliana AT3G57670 N
BGIOSGA023262 Oryza indica BGIOSGA023262 N
BGIOSGA030081 Oryza indica BGIOSGA030081 N
BGIOSGA030484 Oryza indica BGIOSGA030484 N
BGIOSGA031001 Oryza indica BGIOSGA031001 N
Bo4g111000 Brassica oleracea Bo4g111000 N
Bo5g015200 Brassica oleracea Bo5g015200 N
Bo5g081360 Brassica oleracea Bo5g081360 N
Bo6g073120 Brassica oleracea Bo6g073120 N
Bo8g092070 Brassica oleracea Bo8g092070 N
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N
Bra003295 Brassica rapa Bra003295 N
Bra007346 Brassica rapa Bra007346 N
Bra014612 Brassica rapa Bra014612 N
Bra019822 Brassica rapa Bra019822 N
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N
Carubv10017428m.g Capsella rubella Carubv10017428m.g N
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N
cassava16214.m1 Manihot esculenta cassava16214.m1 N
cassava34009.m1 Manihot esculenta cassava34009.m1 N
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N
cassava39829.m1 Manihot esculenta cassava39829.m1 N
cassava41737.m1 Manihot esculenta cassava41737.m1 N
cassava44390.m1 Manihot esculenta cassava44390.m1 N
cassava46219.m1 Manihot esculenta cassava46219.m1 N
cassava5227.m1 Manihot esculenta cassava5227.m1 N
Ca_07269 Cicer arietinum Ca_07269 N
Ca_08435 Cicer arietinum Ca_08435 N
Ca_16482 Cicer arietinum Ca_16482 N
Ca_21713 Cicer arietinum Ca_21713 N
Ca_24699 Cicer arietinum Ca_24699 N
Ca_27078 Cicer arietinum Ca_27078 N
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N
Cla000184 Citrullus lanatus Cla000184 N
Cla002714 Citrullus lanatus Cla002714 N
Cla008187 Citrullus lanatus Cla008187 N
Cla008675 Citrullus lanatus Cla008675 N
Cla015481 Citrullus lanatus Cla015481 N
Cucsa.050260 Cucumis sativus Cucsa.050260 N
Cucsa.065460 Cucumis sativus Cucsa.065460 N
Cucsa.199850 Cucumis sativus Cucsa.199850 N
Cucsa.242970 Cucumis sativus Cucsa.242970 N
Cucsa.248320 Cucumis sativus Cucsa.248320 N
Cucsa.357260 Cucumis sativus Cucsa.357260 N
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N
GLYMA01G22120 Glycine max GLYMA01G22120 N
GLYMA02G10970 Glycine max GLYMA02G10970 N
GLYMA02G31270 Glycine max GLYMA02G31270 N
GLYMA08G16390 Glycine max GLYMA08G16390 N
GLYMA10G34770 Glycine max GLYMA10G34770 N
GLYMA11G19060 Glycine max GLYMA11G19060 N
GLYMA12G09400 Glycine max GLYMA12G09400 N
GLYMA12G30930 Glycine max GLYMA12G30930 N
GLYMA12G36660 Glycine max GLYMA12G36660 N
GLYMA13G01720 Glycine max GLYMA13G01720 N
GLYMA13G27371 Glycine max GLYMA13G27371 N
GLYMA13G39370 Glycine max GLYMA13G39370 N
GLYMA14G35140 Glycine max GLYMA14G35140 N
GLYMA15G42870 Glycine max GLYMA15G42870 N
GLYMA19G32430 Glycine max GLYMA19G32430 N
GLYMA20G32750 Glycine max GLYMA20G32750 N
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N
GRMZM2G061545 Zea mays GRMZM2G061545 N
GRMZM2G071101 Zea mays GRMZM2G071101 N
GRMZM2G150011 Zea mays GRMZM2G150011 N
GRMZM2G435357 Zea mays GRMZM2G435357 N
GRMZM2G436344 Zea mays GRMZM2G436344 N
GRMZM2G445684 Zea mays GRMZM2G445684 N
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N
LPERR06G17470 Leersia perrieri LPERR06G17470 N
LPERR08G16620 Leersia perrieri LPERR08G16620 N
LPERR09G03450 Leersia perrieri LPERR09G03450 N
LPERR09G10700 Leersia perrieri LPERR09G10700 N
Lus10021700.g Linum usitatissimum Lus10021700.g N
Lus10029525.g Linum usitatissimum Lus10029525.g N
Lus10031271.g Linum usitatissimum Lus10031271.g N
Lus10031838.g Linum usitatissimum Lus10031838.g N
Lus10035044.g Linum usitatissimum Lus10035044.g N
Lus10039613.g Linum usitatissimum Lus10039613.g N
MDP0000131949 Malus domestica MDP0000131949 N
MDP0000142494 Malus domestica MDP0000142494 N
MDP0000144266 Malus domestica MDP0000144266 N
MDP0000300013 Malus domestica MDP0000300013 N
MDP0000303483 Malus domestica MDP0000303483 N
MDP0000403797 Malus domestica MDP0000403797 N
MDP0000573922 Malus domestica MDP0000573922 N
MDP0000580545 Malus domestica MDP0000580545 N
MDP0000601705 Malus domestica MDP0000601705 N
MDP0000899280 Malus domestica MDP0000899280 N
mgf019910m Mimulus guttatus mgf019910m N
mgf022319m Mimulus guttatus mgf022319m N
MLOC_54308 Hordeum vulgare MLOC_54308 N
MLOC_65351 Hordeum vulgare MLOC_65351 N
MTR_1g093095 Medicago truncatula MTR_1g093095 N
OB06G28740 Oryza brachyantha OB06G28740 N
OB08G26650 Oryza brachyantha OB08G26650 N
OBART02G07320 Oryza barthii OBART02G07320 N
OBART06G20890 Oryza barthii OBART06G20890 N
OBART08G19670 Oryza barthii OBART08G19670 N
OBART09G03640 Oryza barthii OBART09G03640 N
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N
OMERI08G16450 Oryza meridionalis OMERI08G16450 N
OMERI09G02890 Oryza meridionalis OMERI09G02890 N
OMERI09G03940 Oryza meridionalis OMERI09G03940 N
OMERI09G11270 Oryza meridionalis OMERI09G11270 N
ONIVA02G14580 Oryza nivara ONIVA02G14580 N
ONIVA06G24670 Oryza nivara ONIVA06G24670 N
ONIVA08G08420 Oryza nivara ONIVA08G08420 N
ONIVA08G21960 Oryza nivara ONIVA08G21960 N
ONIVA09G15100 Oryza nivara ONIVA09G15100 N
OPUNC06G19020 Oryza punctata OPUNC06G19020 N
OPUNC08G17810 Oryza punctata OPUNC08G17810 N
OPUNC09G03280 Oryza punctata OPUNC09G03280 N
OPUNC09G04260 Oryza punctata OPUNC09G04260 N
OPUNC09G12930 Oryza punctata OPUNC09G12930 N
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N
OS06G0612300 Oryza sativa OS06G0612300 N
OS08G0504000 Oryza sativa OS08G0504000 N
OS09G0307400 Oryza sativa OS09G0307400 N
OS09G0485600 Oryza sativa OS09G0485600 N
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N
PK03705.1 Cannabis sativa PK03705.1 N
Pm000471 Prunus mume Pm000471 N
Pm001374 Prunus mume Pm001374 N
Pm025853 Prunus mume Pm025853 N
Pm029018 Prunus mume Pm029018 N
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N
Sb02g020840 Sorghum bicolor Sb02g020840 N
Sb07g028010 Sorghum bicolor Sb07g028010 N
Sb10g024040 Sorghum bicolor Sb10g024040 N
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N
Si006616m.g Setaria italica Si006616m.g N
Si013819m.g Setaria italica Si013819m.g N
Si030360m.g Setaria italica Si030360m.g N
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N
TCM_005892 Theobroma cacao TCM_005892 N
TCM_011858 Theobroma cacao TCM_011858 N
TCM_024788 Theobroma cacao TCM_024788 N
TCM_034881 Theobroma cacao TCM_034881 N
TCM_040610 Theobroma cacao TCM_040610 N
TCM_041441 Theobroma cacao TCM_041441 N
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N
TRIUR3_23735 Triticum urartu TRIUR3_23735 N
TRIUR3_30537 Triticum urartu TRIUR3_30537 N
DOT5 Vitis vinifera VIT_01s0011g03100 N
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N
WIP3 Vitis vinifera VIT_06s0080g00270 N
NTT Vitis vinifera VIT_08s0007g08070 N
TT1 Vitis vinifera VIT_18s0001g05860 N