NBR_0001165301 (Nippostrongylus brasiliensis)
C2HC ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01530 (zf-C2HC) IPR002515 NBR_0001165301 T159655_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-11
M00650_2.00 		Caenorhabditis elegans
VAAGTTTN
NAAACTTB		 PBM
Narasimhan et al.(2015)
pTH9925 		0.947 0.947
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0001165301-mRNA-1 C2HC ZF 88 115
NBR_0001165301-mRNA-1 C2HC ZF 134 162

Links

Other C2HC ZF family TFs
Other Nippostrongylus brasiliensis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I 0.000
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
BGIOSGA022875 Oryza indica BGIOSGA022875 I 0.000
Bo1g019180 Brassica oleracea Bo1g019180 I 0.000
Bo7g105690 Brassica oleracea Bo7g105690 I 0.000
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.000
Bra012623 Brassica rapa Bra012623 I 0.000
Bra013277 Brassica rapa Bra013277 I 0.000
Bra013278 Brassica rapa Bra013278 I 0.000
Bra013279 Brassica rapa Bra013279 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.000
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.000
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.000
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.000
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.000
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.000
Ca_02285 Cicer arietinum Ca_02285 I 0.000
Ca_12825 Cicer arietinum Ca_12825 I 0.000
Ca_24009 Cicer arietinum Ca_24009 I 0.000
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.000
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Cla016403 Citrullus lanatus Cla016403 I 0.000
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.000
F775_20285 Aegilops tauschii F775_20285 I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.000
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.000
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.000
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.000
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.000
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.000
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.000
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.000
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.000
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.000
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
MDP0000248863 Malus domestica MDP0000248863 I 0.000
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.000
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.000
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.000
OB06G22250 Oryza brachyantha OB06G22250 I 0.000
OBART03G02540 Oryza barthii OBART03G02540 I 0.000
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.000
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.000
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.000
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.000
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.000
GLK1 Oryza sativa OS06G0348800 I 0.000
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.000
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.000
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.000
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.000
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.000
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.000
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.000
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.000
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.000
Si001336m.g Setaria italica Si001336m.g I 0.000
Si006400m.g Setaria italica Si006400m.g I 0.000
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.000
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.000
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.000
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.000