CBN23380 (Caenorhabditis brenneri)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 CBN23380 T172368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.444 0.444
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.444 0.444
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.444 0.444
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.444 0.444
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.444 0.444
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.444 0.444
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.444 0.444
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.444 0.444
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.444 0.444
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN23380 E2F 98 166
CBN23380 E2F 253 335

Links

Other E2F family TFs
Other Caenorhabditis brenneri TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30089.m001012 Ricinus communis 30089.m001012 N
Ca_10228 Cicer arietinum Ca_10228 N
Ciclev10016383m.g Citrus clementina Ciclev10016383m.g N
Cla011265 Citrullus lanatus Cla011265 N
Cucsa.142580 Cucumis sativus Cucsa.142580 N
GLYMA13G03880 Glycine max GLYMA13G03880 N
GLYMA20G10600 Glycine max GLYMA20G10600 N
Gorai.013G266400 Gossypium raimondii Gorai.013G266400 N
mgf016309m Mimulus guttatus mgf016309m N
MTR_5g088230 Medicago truncatula MTR_5g088230 N
orange1.1g025739m.g Citrus sinensis orange1.1g025739m.g N
PGSC0003DMG400022706 Solanum tuberosum PGSC0003DMG400022706 N
Pm001671 Prunus mume Pm001671 N
POPTR_0001s22790 Populus trichocarpa POPTR_0001s22790 N
POPTR_0009s02360 Populus trichocarpa POPTR_0009s02360 N
PRUPE_ppa022266mg Prunus persica PRUPE_ppa022266mg N
SapurV1A.0977s0060 Salix purpurea SapurV1A.0977s0060 N
SapurV1A.1066s0010 Salix purpurea SapurV1A.1066s0010 N
SapurV1A.1951s0040 Salix purpurea SapurV1A.1951s0040 N
SapurV1A.3860s0010 Salix purpurea SapurV1A.3860s0010 N
Solyc01g008980.2 Solanum lycopersicum Solyc01g008980.2 N
TCM_042034 Theobroma cacao TCM_042034 N
VIT_06s0009g01790 Vitis vinifera VIT_06s0009g01790 N