Thhalv10013977m.g (Eutrema salsugineum)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Thhalv10013977m.g T174023_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.875 0.875
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.875 0.875
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.875 0.875
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.875 0.875
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.691 0.691
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.691 0.691
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.691 0.691
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.566 0.566
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.566 0.566
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.566 0.566
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.566 0.566
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.566 0.566
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.566 0.566
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.544 0.544
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.544 0.544
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.544 0.544
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10013977m E2F 12 76
Thhalv10013977m E2F 137 216

Links

Other E2F family TFs
Other Eutrema salsugineum TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1XBR_A Xenopus laevis 1XBR_A I
1XBR_B Xenopus laevis 1XBR_B I
AAEL011926 Aedes aegypti AAEL011926 I
AALB003755 Anopheles albimanus AALB003755 I
Aan_R012309 Calypte anna Aan_R012309 I
AARA000721 Anopheles arabiensis AARA000721 I
ACOM032190 Anopheles coluzzii ACOM032190 I
ADAC000433 Anopheles darlingi ADAC000433 I
ADIR001942 Anopheles dirus ADIR001942 I
AEPI011219 Anopheles epiroticus AEPI011219 I
Afo_R013116 Aptenodytes forsteri Afo_R013116 I
AFUN010277 Anopheles funestus AFUN010277 I
AGAP011927 Anopheles gambiae AGAP011927 I
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I
AMEC020399 Anopheles melas AMEC020399 I
AMIN008605 Anopheles minimus AMIN008605 I
AQUA010101 Anopheles quadriannulatus AQUA010101 I
ASIS006984 Anopheles sinensis ASIS006984 I
ASTEI05115 Anopheles stephensi ASTEI05115 I
BGIBMGA000322 Bombyx mori BGIBMGA000322 I
Brh_R012030 Buceros rhinoceros Brh_R012030 I
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I
CGI_10018059 Crassostrea gigas CGI_10018059 I
CLEC002870 Cimex lectularius CLEC002870 I
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I
CPIJ011372 Culex quinquefasciatus CPIJ011372 I
CpipJ_CPIJ011372 Culex pipiens CpipJ_CPIJ011372 I
DAPPUDRAFT_44582 Daphnia pulex DAPPUDRAFT_44582 I
T Anolis carolinensis ENSACAG00000003467 I
TBX19 Anolis carolinensis ENSACAG00000010693 I
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I
TBX19 Bos taurus ENSBTAG00000002952 I
T Bos taurus ENSBTAG00000018681 I
T Canis familiaris ENSCAFG00000000807 I
TBX19 Canis familiaris ENSCAFG00000015268 I
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I
brachyury Ciona intestinalis ENSCING00000000810 I
T Callithrix jacchus ENSCJAG00000012508 I
TBX19 Callithrix jacchus ENSCJAG00000016812 I
T Cavia porcellus ENSCPOG00000001358 I
TBX19 Cavia porcellus ENSCPOG00000012456 I
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I
ENSCSAVG00000002247 Ciona savignyi ENSCSAVG00000002247 I
tb Danio rerio ENSDARG00000039806 I
tbx19 Danio rerio ENSDARG00000079187 I
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I
Tbx19 Dipodomys ordii ENSDORG00000014860 I
T Equus caballus ENSECAG00000007994 I
TBX19 Equus caballus ENSECAG00000010186 I
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I
TBX19 Felis catus ENSFCAG00000015047 I
TBX19 Homo sapiens ENSG00000143178 D
T Homo sapiens ENSG00000164458 D
tb Gasterosteus aculeatus ENSGACG00000005258 I
T Gallus gallus ENSGALG00000011489 I
TBX19 Gallus gallus ENSGALG00000015244 I
TBX19 Gorilla gorilla ENSGGOG00000001338 I
T Gorilla gorilla ENSGGOG00000007693 I
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I
ENSLACG00000011042 Latimeria chalumnae ENSLACG00000011042 I
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I
TBX19 Loxodonta africana ENSLAFG00000011227 I
T Loxodonta africana ENSLAFG00000012505 I
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I
TBX19 Microcebus murinus ENSMICG00000007817 I
TBX19 Myotis lucifugus ENSMLUG00000011933 I
SFT2D2 Macaca mulatta ENSMMUG00000005283 I
T Macaca mulatta ENSMMUG00000017047 I
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I
TBX19 Monodelphis domestica ENSMODG00000002921 I
T Monodelphis domestica ENSMODG00000006318 I
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I
Tbx19 Mus musculus ENSMUSG00000026572 I
T Mus musculus ENSMUSG00000062327 D
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I
T Ornithorhynchus anatinus ENSOANG00000012289 I
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I
T Oryctolagus cuniculus ENSOCUG00000000660 I
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I
TBX19 Otolemur garnettii ENSOGAG00000004458 I
T Otolemur garnettii ENSOGAG00000007863 I
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I
T Ochotona princeps ENSOPRG00000003376 I
TBX19 Ochotona princeps ENSOPRG00000016564 I
tb Oryzias latipes ENSORLG00000011262 I
ENSP00000356795 Macaca fascicularis ENSP00000356795 I
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I
TBX19 Pan troglodytes ENSPTRG00000001647 I
T Pan troglodytes ENSPTRG00000018789 I
T Rattus norvegicus ENSRNOG00000012229 I
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I
TBX19 Sus scrofa ENSSSCG00000006299 I
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I
T Taeniopygia guttata ENSTGUG00000009448 I
TBX19 Taeniopygia guttata ENSTGUG00000013434 I
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I
tb Tetraodon nigroviridis ENSTNIG00000016613 I
tbx19 Takifugu rubripes ENSTRUG00000005718 I
tb Takifugu rubripes ENSTRUG00000011958 I
T Tursiops truncatus ENSTTRG00000016665 I
TBX19 Vicugna pacos ENSVPAG00000000446 I
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I
byn Drosophila melanogaster FBgn0011723 D
GA20217 Drosophila pseudoobscura FBgn0080212 I
GF25302 Drosophila ananassae FBgn0102294 I
GG15542 Drosophila erecta FBgn0107790 I
GH14805 Drosophila grimshawi FBgn0122281 I
GI11508 Drosophila mojavensis FBgn0134268 I
GL25108 Drosophila persimilis FBgn0162695 I
GM25308 Drosophila sechellia FBgn0180168 I
GD14339 Drosophila simulans FBgn0186024 I
GJ13700 Drosophila virilis FBgn0200921 I
GK25266 Drosophila willistoni FBgn0227225 I
GE21864 Drosophila yakuba FBgn0239106 I
GB51013 Apis mellifera GB51013 I
Gfo_R000170 Geospiza fortis Gfo_R000170 I
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I
LCUP008716 Lucilia cuprina LCUP008716 I
LotgiG154800 Lottia gigantea LotgiG154800 I
MCINX002868 Melitaea cinxia MCINX002868 I
MDOA012486 Musca domestica MDOA012486 I
ML174736a Mnemiopsis leidyi ML174736a I
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I
NV14821 Nasonia vitripennis NV14821 I
Ogr19099 Ophisaurus gracilis Ogr19099 I
PHUM392580 Pediculus humanus PHUM392580 I
Pvit_02210 Pogona vitticeps Pvit_02210 I
Pvit_04554 Pogona vitticeps Pvit_04554 I
RPRC001186 Rhodnius prolixus RPRC001186 I
SNAPOd2T00000418001 Oikopleura dioica SNAPOd2T00000418001 I
TC014076 Tribolium castaneum TC014076 I
TriadG25521 Trichoplax adhaerens TriadG25521 I
tbxt Xenopus tropicalis XB-GENE-478789 I
t2 Xenopus tropicalis XB-GENE-5981736 I
t2.S Xenopus laevis XB-GENE-5981788 I
tbxt.L Xenopus laevis XB-GENE-6255736 I
tbxt.S Xenopus laevis XB-GENE-865212 I
XP_002154016.1 Hydra magnipapillata XP_002154016.1 I
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I