Cmyd_10009821 (Chelonia mydas)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Cmyd_10009821 T174804_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.884 0.884
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		0.884 0.884
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.860 0.860
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.860 0.860
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.860 0.860
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.860 0.860
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.837 0.837
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.837 0.837
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10009821 EBF1 6 49

Links

Other EBF1 family TFs
Other Chelonia mydas TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R013029 Calypte anna Aan_R013029 I 0.860
ACEP22947 Atta cephalotes ACEP22947 I 0.725
ADAC003479 Anopheles darlingi ADAC003479 I 0.703
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.884
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.875
Alligator_sinensis_CCG017609.1 Alligator sinensis Alligator_sinensis_CCG017609.1 I 0.900
BGIBMGA011565 Bombyx mori BGIBMGA011565 I 0.821
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
Cflo_00077--XP_394171.3_APIME Camponotus floridanus Cflo_00077--XP_394171.3_APIME I 0.725
CJA00446 Caenorhabditis japonica CJA00446 I 0.722
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.860
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.884
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.860
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.884
EBF3 Bos taurus ENSBTAG00000008272 I 0.860
EBF2 Bos taurus ENSBTAG00000040390 I 0.884
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.884
EBF2 Canis familiaris ENSCAFG00000008918 I 0.884
EBF3 Canis familiaris ENSCAFG00000013267 I 0.860
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.814
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.837
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.884
ENSCSAG00000010520 Chlorocebus sabaeus ENSCSAG00000010520 I 0.860
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I 0.837
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.814
ebf1b Danio rerio ENSDARG00000069196 I 0.814
ebf1a Danio rerio ENSDARG00000099849 I 0.837
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.875
EBF1 Dasypus novemcinctus ENSDNOG00000035396 I 0.860
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.884
EBF1 Equus caballus ENSECAG00000007964 I 0.875
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.884
ENSFCAG00000027202 Felis catus ENSFCAG00000027202 I 0.860
EBF1 Homo sapiens ENSG00000164330 D 0.860
EBF2 Homo sapiens ENSG00000221818 D 0.884
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.837
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.860
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.814
EBF2 Gallus gallus ENSGALG00000000242 I 0.884
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.884
ENSLACG00000005494 Latimeria chalumnae ENSLACG00000005494 I 0.860
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.884
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.860
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.884
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.884
ENSMGAG00000016563 Meleagris gallopavo ENSMGAG00000016563 I 0.860
EBF3 Myotis lucifugus ENSMLUG00000005478 I 0.860
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.884
EBF4 Macaca mulatta ENSMMUG00000021331 I 1.000
ENSMPUG00000002449 Mustela putorius furo ENSMPUG00000002449 I 0.860
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.884
ENSMPUG00000013414 Mustela putorius furo ENSMPUG00000013414 I 0.860
Ebf4 Mus musculus ENSMUSG00000053552 D 0.837
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I 0.837
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.884
ENSOANG00000004212 Ornithorhynchus anatinus ENSOANG00000004212 I 0.900
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.884
ENSOARG00000012836 Ovis aries ENSOARG00000012836 I 0.860
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.884
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.884
EBF4 Oryzias latipes ENSORLG00000020414 I 0.860
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.860
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.837
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.875
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.860
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.884
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.860
ENSPMAG00000004238 Petromyzon marinus ENSPMAG00000004238 I 0.814
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.884
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.884
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.837
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.884
ENSSHAG00000000353 Sarcophilus harrisii ENSSHAG00000000353 I 0.860
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.837
EBF2 Sus scrofa ENSSSCG00000009655 I 0.884
ENSSTOG00000007966 Ictidomys tridecemlineatus ENSSTOG00000007966 I 0.884
EBF1 Tupaia belangeri ENSTBEG00000007800 I 0.860
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.884
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.791
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.837
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.837
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.860
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.837
estExt_gwp.C_3380002 Branchiostoma floridae estExt_gwp.C_3380002 I 1.000
estExt_gwp.C_3810003 Branchiostoma floridae estExt_gwp.C_3810003 I 0.767
GF11778 Drosophila ananassae FBgn0088818 I 0.721
GH12956 Drosophila grimshawi FBgn0120434 I 0.725
GL10656 Drosophila persimilis FBgn0148266 I 0.721
GJ21945 Drosophila virilis FBgn0209060 I 0.721
GK23295 Drosophila willistoni FBgn0225257 I 0.721
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.721
Hba_09581 Heterorhabditis bacteriophora Hba_09581 I 0.812
HMEL014948 Heliconius melpomene HMEL014948 I 0.821
Hsal_03263--XP_394171.3_APIME Harpegnathos saltator Hsal_03263--XP_394171.3_APIME I 0.725
KGM_09934 Danaus plexippus KGM_09934 I 0.721
MCINX016126 Melitaea cinxia MCINX016126 I 0.725
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.875
Myotis_brandtii_EBF2_10005813 Myotis brandtii Myotis_brandtii_EBF2_10005813 I 0.814
Myotis_brandtii_Ebf3_10024819 Myotis brandtii Myotis_brandtii_Ebf3_10024819 I 0.919
Pvit_11383 Pogona vitticeps Pvit_11383 I 0.860
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.875
Pvit_12666 Pogona vitticeps Pvit_12666 I 1.000
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.730
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.814
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.837
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.884
ebf2.S Xenopus laevis XB-GENE-971141 I 0.884