CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0003s22090
(
Populus trichocarpa
)
EIN3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04873 (EIN3)
IPR006957
POPTR_0003s22090
T175201_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EIL3
M00723_2.00
Arabidopsis thaliana
NAGRTWCATNN
NNATGWAYCTN
PBM
Chang et al.(2013)
pTH7933
0.830
0.830
EIL3
M06877_2.00
Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH
DDNDWNHWTGWAYCTRGACRN
Dap-seq
OMalley et al.(2016)
EIL3_col_b
0.830
0.830
OS09G0490200
M01970_2.00
Oryza sativa
NMGRTACATNN
NNATGTAYCKN
PBM
Weirauch et al.(2014)
pTH9013
0.798
0.798
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.725
0.725
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT
ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.725
0.725
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.700
0.700
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.700
0.700
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR
YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0003s22090.1
EIN3
38
285
EALERRMWKDHVKLKRIKEKQKLAAQQAAEKQKPKQATDQARRKKMARAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAIGEAENSRNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWVKLGLSLGQSPPYKKPHDLKKMWKVGVLTAVIKHMTPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREE
Links
Other
EIN3
family TFs
Other
Populus trichocarpa
TFs
166 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29708.m000185
Ricinus communis
29708.m000185
I
0.704
30169.m006395
Ricinus communis
30169.m006395
I
0.923
AC234203.1_FG011
Zea mays
AC234203.1_FG011
I
0.723
AMTR_s00022p00216890
Amborella trichopoda
AMTR_s00022p00216890
I
0.800
AMTR_s00119p00117410
Amborella trichopoda
AMTR_s00119p00117410
I
0.718
Aquca_007_00017
Aquilegia coerulea
Aquca_007_00017
I
0.850
Aquca_014_00938
Aquilegia coerulea
Aquca_014_00938
I
0.707
EIL3
Arabidopsis thaliana
AT1G73730
D
0.833
EIN3
Arabidopsis thaliana
AT3G20770
D
0.703
BGIOSGA012535
Oryza indica
BGIOSGA012535
I
0.701
BGIOSGA029545
Oryza indica
BGIOSGA029545
I
0.788
Bo5g106280
Brassica oleracea
Bo5g106280
I
0.702
Bo6g087550
Brassica oleracea
Bo6g087550
I
0.824
Bo6g118030
Brassica oleracea
Bo6g118030
I
0.829
Bostr.19424s0573
Boechera stricta
Bostr.19424s0573
I
0.703
Bostr.3288s0016
Boechera stricta
Bostr.3288s0016
I
0.817
Bra003831
Brassica rapa
Bra003831
I
0.736
Bra008110
Brassica rapa
Bra008110
I
0.827
Bra015970
Brassica rapa
Bra015970
I
0.823
BRADI1G63780
Brachypodium distachyon
BRADI1G63780
I
0.700
BRADI3G39970
Brachypodium distachyon
BRADI3G39970
I
0.711
BRADI4G33750
Brachypodium distachyon
BRADI4G33750
I
0.755
Cagra.0876s0005
Capsella grandiflora
Cagra.0876s0005
I
0.829
Cagra.2243s0007
Capsella grandiflora
Cagra.2243s0007
I
0.703
Carubv10013213m.g
Capsella rubella
Carubv10013213m.g
I
0.703
Carubv10020043m.g
Capsella rubella
Carubv10020043m.g
I
0.829
cassava2120.valid.m1
Manihot esculenta
cassava2120.valid.m1
I
0.907
cassava30700.valid.m1
Manihot esculenta
cassava30700.valid.m1
I
0.854
cassava3620.m1
Manihot esculenta
cassava3620.m1
I
0.720
Ca_02669
Cicer arietinum
Ca_02669
I
0.911
chr2.CM0031.190.nc
Lotus japonicus
chr2.CM0031.190.nc
I
0.707
chr3.LjB09K03.50.nc
Lotus japonicus
chr3.LjB09K03.50.nc
I
0.919
Ciclev10000608m.g
Citrus clementina
Ciclev10000608m.g
I
0.707
Ciclev10000617m.g
Citrus clementina
Ciclev10000617m.g
I
0.707
Ciclev10014617m.g
Citrus clementina
Ciclev10014617m.g
I
0.707
Ciclev10015261m.g
Citrus clementina
Ciclev10015261m.g
I
0.927
Cla006390
Citrullus lanatus
Cla006390
I
0.821
Cucsa.142750
Cucumis sativus
Cucsa.142750
I
0.703
Cucsa.143220
Cucumis sativus
Cucsa.143220
I
0.927
Cucsa.364340
Cucumis sativus
Cucsa.364340
I
0.707
Eucgr.B03664
Eucalyptus grandis
Eucgr.B03664
I
0.887
Eucgr.G02632
Eucalyptus grandis
Eucgr.G02632
I
0.703
Eucgr.J00631
Eucalyptus grandis
Eucgr.J00631
I
0.715
evm.TU.supercontig_103.60
Carica papaya
evm.TU.supercontig_103.60
I
0.720
e_gw1.11.194.1
Physcomitrella patens
e_gw1.11.194.1
I
0.731
e_gw1.87.73.1
Physcomitrella patens
e_gw1.87.73.1
D
0.728
F775_17920
Aegilops tauschii
F775_17920
I
0.771
EIN3
Arabidopsis lyrata
fgenesh2_kg.3__2304__AT3G20770.1
I
0.707
EIL1
Arabidopsis lyrata
fgenesh2_kg.4__646__AT2G27050.1
I
0.704
gene20650-v1.0-hybrid
Fragaria vesca
gene20650-v1.0-hybrid
I
0.903
GLYMA13G03660
Glycine max
GLYMA13G03660
I
0.711
GLYMA13G41751
Glycine max
GLYMA13G41751
I
0.879
GLYMA14G04550
Glycine max
GLYMA14G04550
I
0.703
GLYMA15G03650
Glycine max
GLYMA15G03650
I
0.895
GLYMA20G12250
Glycine max
GLYMA20G12250
I
0.703
Gorai.003G140600
Gossypium raimondii
Gorai.003G140600
I
0.703
Gorai.004G227800
Gossypium raimondii
Gorai.004G227800
I
0.703
Gorai.009G071400
Gossypium raimondii
Gorai.009G071400
I
0.879
Gorai.009G105400
Gossypium raimondii
Gorai.009G105400
I
0.707
Gorai.010G128700
Gossypium raimondii
Gorai.010G128700
I
0.862
Gorai.013G250300
Gossypium raimondii
Gorai.013G250300
I
0.783
GRMZM2G006752
Zea mays
GRMZM2G006752
I
0.739
GRMZM2G033570
Zea mays
GRMZM2G033570
I
0.701
GSMUA_Achr10G12800_001
Musa acuminata
GSMUA_Achr10G12800_001
I
0.700
GSMUA_Achr3G11160_001
Musa acuminata
GSMUA_Achr3G11160_001
I
0.789
GSMUA_Achr8G25580_001
Musa acuminata
GSMUA_Achr8G25580_001
I
0.762
GSMUA_Achr9G27680_001
Musa acuminata
GSMUA_Achr9G27680_001
I
0.786
LjSGA_067101.1
Lotus japonicus
LjSGA_067101.1
I
0.702
LPERR03G13760
Leersia perrieri
LPERR03G13760
I
0.709
LPERR08G16890
Leersia perrieri
LPERR08G16890
I
0.731
LPERR09G10870
Leersia perrieri
LPERR09G10870
I
0.763
Lus10031245.g
Linum usitatissimum
Lus10031245.g
I
0.887
Lus10031817.g
Linum usitatissimum
Lus10031817.g
I
0.870
MDP0000202831
Malus domestica
MDP0000202831
I
0.707
MDP0000490180
Malus domestica
MDP0000490180
I
0.915
MDP0000562585
Malus domestica
MDP0000562585
I
0.903
MDP0000565880
Malus domestica
MDP0000565880
I
0.903
mgf020935m
Mimulus guttatus
mgf020935m
I
0.866
MLOC_10315
Hordeum vulgare
MLOC_10315
I
0.735
MLOC_10823
Hordeum vulgare
MLOC_10823
I
0.771
MTR_2g098470
Medicago truncatula
MTR_2g098470
I
0.891
MTR_3g078770
Medicago truncatula
MTR_3g078770
I
0.703
OB08G26880
Oryza brachyantha
OB08G26880
I
0.719
OB09G21280
Oryza brachyantha
OB09G21280
I
0.767
OBART08G19960
Oryza barthii
OBART08G19960
I
0.727
OBART09G14750
Oryza barthii
OBART09G14750
I
0.792
OGLUM03G15860
Oryza glumaepatula
OGLUM03G15860
I
0.701
OGLUM08G21190
Oryza glumaepatula
OGLUM08G21190
I
0.731
OGLUM09G15380
Oryza glumaepatula
OGLUM09G15380
I
0.792
OMERI03G14140
Oryza meridionalis
OMERI03G14140
I
0.701
OMERI05G02190
Oryza meridionalis
OMERI05G02190
I
0.758
OMERI08G16770
Oryza meridionalis
OMERI08G16770
I
0.727
OMERI09G11470
Oryza meridionalis
OMERI09G11470
I
0.788
ONIVA03G16680
Oryza nivara
ONIVA03G16680
I
0.701
ONIVA08G17420
Oryza nivara
ONIVA08G17420
I
0.792
ONIVA08G22530
Oryza nivara
ONIVA08G22530
I
0.727
OPUNC03G15240
Oryza punctata
OPUNC03G15240
I
0.701
OPUNC08G18080
Oryza punctata
OPUNC08G18080
I
0.727
OPUNC09G13210
Oryza punctata
OPUNC09G13210
I
0.784
orange1.1g007017m.g
Citrus sinensis
orange1.1g007017m.g
I
0.707
orange1.1g007174m.g
Citrus sinensis
orange1.1g007174m.g
I
0.707
orange1.1g007662m.g
Citrus sinensis
orange1.1g007662m.g
I
0.927
orange1.1g009144m.g
Citrus sinensis
orange1.1g009144m.g
I
0.707
ORGLA03G0150600
Oryza glaberrima
ORGLA03G0150600
I
0.701
ORGLA09G0113600
Oryza glaberrima
ORGLA09G0113600
I
0.792
ORUFI03G16290
Oryza rufipogon
ORUFI03G16290
I
0.701
ORUFI08G22370
Oryza rufipogon
ORUFI08G22370
I
0.727
ORUFI09G15900
Oryza rufipogon
ORUFI09G15900
I
0.788
OS03G0324200
Oryza sativa
OS03G0324200
I
0.701
OS03G0324300
Oryza sativa
OS03G0324300
I
0.701
OS08G0508700
Oryza sativa
OS08G0508700
I
0.727
OS09G0490200
Oryza sativa
OS09G0490200
D
0.788
Pavir.Fa00424
Panicum virgatum
Pavir.Fa00424
I
0.723
Pavir.Fb01951
Panicum virgatum
Pavir.Fb01951
I
0.728
Pavir.Ia03450
Panicum virgatum
Pavir.Ia03450
I
0.701
Pavir.Ib01512
Panicum virgatum
Pavir.Ib01512
I
0.705
Pavir.J02229
Panicum virgatum
Pavir.J02229
I
0.751
Pavir.J14329
Panicum virgatum
Pavir.J14329
I
0.751
PDK_20s1301801g002
Phoenix dactylifera
PDK_20s1301801g002
I
0.790
PGSC0003DMG400005914
Solanum tuberosum
PGSC0003DMG400005914
I
0.703
PGSC0003DMG400005915
Solanum tuberosum
PGSC0003DMG400005915
I
0.728
PGSC0003DMG400008712
Solanum tuberosum
PGSC0003DMG400008712
I
0.707
PGSC0003DMG400021381
Solanum tuberosum
PGSC0003DMG400021381
I
0.826
PGSC0003DMG400027507
Solanum tuberosum
PGSC0003DMG400027507
I
0.707
PGSC0003DMG400029908
Solanum tuberosum
PGSC0003DMG400029908
I
0.883
PK13351.1
Cannabis sativa
PK13351.1
I
0.707
PK19114.1
Cannabis sativa
PK19114.1
I
0.911
Pm028171
Prunus mume
Pm028171
I
0.892
POPTR_0001s05360
Populus trichocarpa
POPTR_0001s05360
I
0.943
POPTR_0001s05370
Populus trichocarpa
POPTR_0001s05370
I
0.792
POPTR_0009s16080
Populus trichocarpa
POPTR_0009s16080
I
0.703
PRUPE_ppa003113mg
Prunus persica
PRUPE_ppa003113mg
I
0.896
Q9ZWK1_TOBAC
Nicotiana tabacum
Q9ZWK1_TOBAC
D
0.725
SapurV1A.0009s0320
Salix purpurea
SapurV1A.0009s0320
I
0.984
SapurV1A.0615s0150
Salix purpurea
SapurV1A.0615s0150
I
0.711
SapurV1A.0850s0030
Salix purpurea
SapurV1A.0850s0030
I
0.947
Sb01g036740
Sorghum bicolor
Sb01g036740
I
0.701
Sb02g028390
Sorghum bicolor
Sb02g028390
I
0.743
Sb07g027790
Sorghum bicolor
Sb07g027790
I
0.723
EIL3
Arabidopsis lyrata
scaffold_202309.1
I
0.837
SELMODRAFT_112063
Selaginella moellendorffii
SELMODRAFT_112063
I
0.730
SELMODRAFT_136229
Selaginella moellendorffii
SELMODRAFT_136229
I
0.730
SELMODRAFT_419770
Selaginella moellendorffii
SELMODRAFT_419770
I
0.778
Si013426m.g
Setaria italica
Si013426m.g
I
0.727
Si029259m.g
Setaria italica
Si029259m.g
I
0.759
Si034616m.g
Setaria italica
Si034616m.g
I
0.705
Solyc01g006650.1
Solanum lycopersicum
Solyc01g006650.1
I
0.830
Solyc01g009170.2
Solanum lycopersicum
Solyc01g009170.2
I
0.703
Solyc01g014480.2
Solanum lycopersicum
Solyc01g014480.2
I
0.879
Solyc01g096810.2
Solanum lycopersicum
Solyc01g096810.2
I
0.707
Solyc06g073720.1
Solanum lycopersicum
Solyc06g073720.1
I
0.728
Solyc06g073730.1
Solanum lycopersicum
Solyc06g073730.1
I
0.703
TCM_040510
Theobroma cacao
TCM_040510
I
0.891
TCM_042022
Theobroma cacao
TCM_042022
I
0.711
Thhalv10001938m.g
Eutrema salsugineum
Thhalv10001938m.g
I
0.700
Thhalv10018327m.g
Eutrema salsugineum
Thhalv10018327m.g
I
0.833
Traes_4BL_F34EBD618
Triticum aestivum
Traes_4BL_F34EBD618
I
0.734
Traes_5AL_B65EF5518
Triticum aestivum
Traes_5AL_B65EF5518
I
0.767
Traes_5BL_B6051DD37
Triticum aestivum
Traes_5BL_B6051DD37
I
0.771
Traes_5DL_62DEF8361
Triticum aestivum
Traes_5DL_62DEF8361
I
0.812
Traes_7AS_34D476D5D1
Triticum aestivum
Traes_7AS_34D476D5D1
I
0.731
Traes_7BS_733347AC0
Triticum aestivum
Traes_7BS_733347AC0
I
0.735
Traes_7DS_3673F1C73
Triticum aestivum
Traes_7DS_3673F1C73
I
0.735
TRIUR3_28079
Triticum urartu
TRIUR3_28079
I
0.731
EIL3
Vitis vinifera
VIT_06s0004g01610
I
0.899
VIT_13s0047g00250
Vitis vinifera
VIT_13s0047g00250
I
0.707