CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ogr19511 *(Ophisaurus gracilis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	Ogr19511	T189198_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.886	1.000
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.886	1.000
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.886	1.000
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.886	1.000
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.886	1.000
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.886	1.000
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.886	1.000
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.886	1.000
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.886	1.000
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.886	1.000
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.886	1.000
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.886	1.000
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.886	1.000
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.886	1.000
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.886	1.000
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.886	1.000
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.886	1.000
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.886	1.000
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.886	1.000
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.886	1.000
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.886	1.000
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.886	1.000
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.874	0.942
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.854	0.953
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.854	0.953
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.854	0.953
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.854	0.953
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.854	0.953
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.854	0.953
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.854	0.953
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.842	0.930
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.842	0.930
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.842	0.930
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.842	0.930
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.842	0.930
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.842	0.930
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.842	0.930
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.842	0.930
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.842	0.930
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.842	0.930
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.842	0.930
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.820	0.884
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.820	0.884
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.820	0.884
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.820	0.884
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.820	0.884
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.820	0.884
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.817	0.860
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.817	0.860
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.817	0.860
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.694	0.733
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.694	0.733
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.694	0.733
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.694	0.733
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.694	0.733
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.694	0.733
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.694	0.733
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.686	0.698
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ogr19511	Forkhead	216	305	KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFENGCY

Links
Other Forkhead family TFs
Other *Ophisaurus gracilis* TFs

502 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG001547.1	Alligator sinensis	Alligator_sinensis_CCG001547.1	N
KMT2B	Anolis carolinensis	ENSACAG00000016679	N
ENSAMEG00000000319	Ailuropoda melanoleuca	ENSAMEG00000000319	N
ENSAMXG00000004670	Astyanax mexicanus	ENSAMXG00000004670	N
KMT2B	Bos taurus	ENSBTAG00000002763	N
KMT2B	Canis familiaris	ENSCAFG00000006878	N
KMT2B	Callithrix jacchus	ENSCJAG00000010126	I
KMT2B	Cavia porcellus	ENSCPOG00000003718	N
ENSCSAG00000004387	Chlorocebus sabaeus	ENSCSAG00000004387	N
kmt2bb	Danio rerio	ENSDARG00000060697	N
KMT2B	Dasypus novemcinctus	ENSDNOG00000005517	N
Kmt2b	Dipodomys ordii	ENSDORG00000009061	N
ENSECAG00000007605	Equus caballus	ENSECAG00000007605	N
KMT2B	Erinaceus europaeus	ENSEEUG00000013250	N
KMT2B	Felis catus	ENSFCAG00000006381	N
KMT2B	Homo sapiens	ENSG00000272333	N
ENSGACG00000004248	Gasterosteus aculeatus	ENSGACG00000004248	N
ENSGACG00000007639	Gasterosteus aculeatus	ENSGACG00000007639	N
KMT2B	Gorilla gorilla	ENSGGOG00000016796	N
ENSGMOG00000000095	Gadus morhua	ENSGMOG00000000095	N
ENSGMOG00000011724	Gadus morhua	ENSGMOG00000011724	I
ENSGMOG00000017196	Gadus morhua	ENSGMOG00000017196	N
KMT2B	Loxodonta africana	ENSLAFG00000018741	N
ENSLOCG00000004031	Lepisosteus oculatus	ENSLOCG00000004031	N
ENSMEUG00000014580	Macropus eugenii	ENSMEUG00000014580	N
KMT2B	Microcebus murinus	ENSMICG00000009928	N
KMT2B	Myotis lucifugus	ENSMLUG00000011406	N
KMT2B	Macaca mulatta	ENSMMUG00000002381	N
KMT2B	Monodelphis domestica	ENSMODG00000013994	N
ENSMPUG00000006206	Mustela putorius furo	ENSMPUG00000006206	N
Kmt2b	Mus musculus	ENSMUSG00000006307	N
ENSNLEG00000011306	Nomascus leucogenys	ENSNLEG00000011306	N
ENSOARG00000004987	Ovis aries	ENSOARG00000004987	N
KMT2B	Oryctolagus cuniculus	ENSOCUG00000012768	N
KMT2B	Otolemur garnettii	ENSOGAG00000004157	N
ENSONIG00000002752	Oreochromis niloticus	ENSONIG00000002752	N
ENSONIG00000019760	Oreochromis niloticus	ENSONIG00000019760	N
KMT2B	Ochotona princeps	ENSOPRG00000001336	N
ENSORLG00000006471	Oryzias latipes	ENSORLG00000006471	N
ENSP00000398837	Macaca fascicularis	ENSP00000398837	N
ENSP00000398837-D1	Bos grunniens	ENSP00000398837-D1	N
ENSPANG00000007179	Papio anubis	ENSPANG00000007179	N
KMT2B	Procavia capensis	ENSPCAG00000004566	N
ENSPFOG00000006642	Poecilia formosa	ENSPFOG00000006642	N
ENSPFOG00000008123	Poecilia formosa	ENSPFOG00000008123	I
ENSPPYG00000009877	Pongo abelii	ENSPPYG00000009877	N
KMT2B	Pan troglodytes	ENSPTRG00000010858	N
KMT2B	Pteropus vampyrus	ENSPVAG00000012828	N
Kmt2b	Rattus norvegicus	ENSRNOG00000055525	N
ENSSSCG00000002895	Sus scrofa	ENSSSCG00000002895	N
ENSSTOG00000027453	Ictidomys tridecemlineatus	ENSSTOG00000027453	N
KMT2B	Tupaia belangeri	ENSTBEG00000007263	N
ENSTNIG00000018468	Tetraodon nigroviridis	ENSTNIG00000018468	N
ENSTRUG00000013996	Takifugu rubripes	ENSTRUG00000013996	N
ENSTRUG00000015234	Takifugu rubripes	ENSTRUG00000015234	N
KMT2B	Tursiops truncatus	ENSTTRG00000002243	N
ENSXMAG00000010541	Xiphophorus maculatus	ENSXMAG00000010541	N
Myotis_brandtii_WBP7_10035154	Myotis brandtii	Myotis_brandtii_WBP7_10035154	N
Ogr13647	Ophisaurus gracilis	Ogr13647	N
Pvit_00563	Pogona vitticeps	Pvit_00563	N
kmt2a	Xenopus tropicalis	XB-GENE-922912	D
XP_002932944	Xenopus tropicalis	XP_002932944	I
XP_002932945	Xenopus tropicalis	XP_002932945	I

Ogr19511 (Ophisaurus gracilis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

502 Related TFs

Ogr19511 **(Ophisaurus gracilis)
Forkhead**