BGIOSGA016846 (Oryza indica)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 BGIOSGA016846 T191819_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.856 0.944
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.856 0.944
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.832 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.828 0.917
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA016846-PA GATA 305 340

Links

Other GATA family TFs
Other Oryza indica TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28206.m000104 Ricinus communis 28206.m000104 I 0.000
29908.m006005 Ricinus communis 29908.m006005 I 0.000
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.000
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.000
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.000
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.000
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.000
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.000
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.000
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.000
ERF055 Arabidopsis thaliana AT1G36060 D 0.000
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.000
ERF053 Arabidopsis thaliana AT2G20880 I 0.000
ERF054 Arabidopsis thaliana AT4G28140 D 0.000
ERF060 Arabidopsis thaliana AT4G39780 I 0.000
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.000
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.000
Bo04101s010 Brassica oleracea Bo04101s010 I 0.000
Bo1g051230 Brassica oleracea Bo1g051230 I 0.000
Bo3g100470 Brassica oleracea Bo3g100470 I 0.000
Bo3g152610 Brassica oleracea Bo3g152610 I 0.000
Bo5g037400 Brassica oleracea Bo5g037400 I 0.000
Bo5g069450 Brassica oleracea Bo5g069450 I 0.000
Bo6g081850 Brassica oleracea Bo6g081850 I 0.000
Bo6g121730 Brassica oleracea Bo6g121730 I 0.000
Bo7g111910 Brassica oleracea Bo7g111910 I 0.000
Bo7g119000 Brassica oleracea Bo7g119000 I 0.000
Bo8g054130 Brassica oleracea Bo8g054130 I 0.000
Bo8g102130 Brassica oleracea Bo8g102130 I 0.000
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.000
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.000
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.000
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.000
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.000
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.000
Bra003659 Brassica rapa Bra003659 I 0.000
Bra008343 Brassica rapa Bra008343 I 0.000
Bra010383 Brassica rapa Bra010383 I 0.000
Bra010657 Brassica rapa Bra010657 I 0.000
Bra015634 Brassica rapa Bra015634 I 0.000
Bra017879 Brassica rapa Bra017879 I 0.000
Bra024222 Brassica rapa Bra024222 I 0.000
Bra024357 Brassica rapa Bra024357 I 0.000
Bra026280 Brassica rapa Bra026280 I 0.000
Bra031146 Brassica rapa Bra031146 I 0.000
Bra031371 Brassica rapa Bra031371 I 0.000
Bra040381 Brassica rapa Bra040381 I 0.000
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.000
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.000
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.000
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.000
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.000
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.000
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.000
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.000
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.000
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.000
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.000
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.000
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.000
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.000
Ca_09578 Cicer arietinum Ca_09578 I 0.000
Ca_16631 Cicer arietinum Ca_16631 I 0.000
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.000
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.000
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.000
Cla014376 Citrullus lanatus Cla014376 I 0.000
Cla022420 Citrullus lanatus Cla022420 I 0.000
Cla023489 Citrullus lanatus Cla023489 I 0.000
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.000
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.000
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.000
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.000
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.000
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.000
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.000
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.000
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.000
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.000
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.000
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.000
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.000
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.000
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.000
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.000
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.000
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.000
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.000
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.000
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.000
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.000
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.000
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.000
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.000
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.000
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.000
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.000
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.000
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.000
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.000
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.000
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.000
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.000
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.000
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.000
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.000
MDP0000313476 Malus domestica MDP0000313476 I 0.000
MDP0000453797 Malus domestica MDP0000453797 I 0.000
MDP0000683814 Malus domestica MDP0000683814 I 0.000
MDP0000865032 Malus domestica MDP0000865032 I 0.000
mgf002388m Mimulus guttatus mgf002388m I 0.000
mgf023311m Mimulus guttatus mgf023311m I 0.000
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.000
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.000
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.000
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.000
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.000
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.000
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.000
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.000
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.000
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.000
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.000
OS03G0191900 Oryza sativa OS03G0191900 I 0.000
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.000
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.000
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.000
PK18885.1 Cannabis sativa PK18885.1 I 0.000
PK27482.1 Cannabis sativa PK27482.1 I 0.000
Pm002052 Prunus mume Pm002052 I 0.000
Pm004824 Prunus mume Pm004824 I 0.000
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.000
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.000
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.000
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.000
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.000
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.000
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.000
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.000
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.000
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.000
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.000
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.000
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.000
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.000
Si036827m.g Setaria italica Si036827m.g I 0.000
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.000
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.000
TCM_001147 Theobroma cacao TCM_001147 I 0.000
TCM_034939 Theobroma cacao TCM_034939 I 0.000
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.000
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.000
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.000
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.000
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.000
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.000
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.000
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.000