Bra001925 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra001925 T191935_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.851 0.944
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.851 0.944
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.851 0.944
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.833
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.837 0.861
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.837 0.861
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.837 0.861
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.833
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.832 0.833
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.830 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.830 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.830 0.806
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001925.1-P GATA 194 229

Links

Other GATA family TFs
Other Brassica rapa TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I 0.000
A_02037 Schistosoma haematobium A_02037 I 0.000
BGIBMGA006942 Bombyx mori BGIBMGA006942 I 0.000
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I 0.000
ECANG7_05597 Echinococcus canadensis ECANG7_05597 I 0.000
EmuJ_000748800 Echinococcus multilocularis EmuJ_000748800 I 0.000
SP6 Anolis carolinensis ENSACAG00000006831 I 0.000
SP5 Anolis carolinensis ENSACAG00000016843 I 0.000
ENSAMEG00000019912 Ailuropoda melanoleuca ENSAMEG00000019912 I 0.000
ENSAMXG00000025599 Astyanax mexicanus ENSAMXG00000025599 I 0.000
SP6 Bos taurus ENSBTAG00000001825 I 0.000
ENSBTAP00000002386-D1 Bos grunniens ENSBTAP00000002386-D1 I 0.000
SP6 Canis familiaris ENSCAFG00000016810 I 0.000
SP6 Callithrix jacchus ENSCJAG00000007740 I 0.000
SP6 Cavia porcellus ENSCPOG00000007638 I 0.000
ENSCSAG00000019041 Chlorocebus sabaeus ENSCSAG00000019041 I 0.000
sp8a Danio rerio ENSDARG00000011870 I 0.000
SP6 Danio rerio ENSDARG00000099880 N 0.000
SP6 Dasypus novemcinctus ENSDNOG00000042665 I 0.000
SP6 Equus caballus ENSECAG00000012853 I 0.000
SP6 Echinops telfairi ENSETEG00000017017 I 0.000
SP6 Felis catus ENSFCAG00000009363 I 0.000
SP6 Homo sapiens ENSG00000189120 I 0.000
zgc:77358 Gasterosteus aculeatus ENSGACG00000018154 N 0.000
SP6 Gorilla gorilla ENSGGOG00000004544 I 0.000
ENSGGOG00000027746 Gorilla gorilla ENSGGOG00000027746 I 0.000
ENSGMOG00000020473 Gadus morhua ENSGMOG00000020473 N 0.000
ENSLACG00000005288 Latimeria chalumnae ENSLACG00000005288 I 0.000
SP6 Loxodonta africana ENSLAFG00000010701 I 0.000
ENSLOCG00000013714 Lepisosteus oculatus ENSLOCG00000013714 N 0.000
ENSMEUG00000007329 Macropus eugenii ENSMEUG00000007329 I 0.000
ENSMICG00000004826 Microcebus murinus ENSMICG00000004826 I 0.000
SP6 Macaca mulatta ENSMMUG00000003011 I 0.000
SP6 Monodelphis domestica ENSMODG00000012454 I 0.000
ENSMPUG00000020086 Mustela putorius furo ENSMPUG00000020086 I 0.000
Sp6 Mus musculus ENSMUSG00000038560 I 0.000
ENSNLEG00000002050 Nomascus leucogenys ENSNLEG00000002050 I 0.000
SP6 Oryctolagus cuniculus ENSOCUG00000023482 I 0.000
SP6 Otolemur garnettii ENSOGAG00000030282 I 0.000
ENSONIG00000003253 Oreochromis niloticus ENSONIG00000003253 N 0.000
SP6 Ochotona princeps ENSOPRG00000004019 I 0.000
ENSORLG00000018574 Oryzias latipes ENSORLG00000018574 N 0.000
ENSP00000340799 Macaca fascicularis ENSP00000340799 I 0.000
ENSPANG00000017158 Papio anubis ENSPANG00000017158 I 0.000
ENSPPYG00000008884 Pongo abelii ENSPPYG00000008884 I 0.000
SP6 Pan troglodytes ENSPTRG00000009340 I 0.000
SP6 Pteropus vampyrus ENSPVAG00000004254 I 0.000
SP5 Pteropus vampyrus ENSPVAG00000006625 I 0.000
Sp6 Rattus norvegicus ENSRNOG00000023551 I 0.000
ENSSHAG00000004124 Sarcophilus harrisii ENSSHAG00000004124 I 0.000
SP6 Sus scrofa ENSSSCG00000017522 I 0.000
ENSSTOG00000001607 Ictidomys tridecemlineatus ENSSTOG00000001607 I 0.000
zgc:77358 Tetraodon nigroviridis ENSTNIG00000014142 N 0.000
ENSTRUG00000004645 Takifugu rubripes ENSTRUG00000004645 N 0.000
SP6 Tursiops truncatus ENSTTRG00000012481 I 0.000
ENSXMAG00000018112 Xiphophorus maculatus ENSXMAG00000018112 N 0.000
KGM_00011 Danaus plexippus KGM_00011 I 0.000
MCINX013793 Melitaea cinxia MCINX013793 I 0.000
Ogr12594 Ophisaurus gracilis Ogr12594 I 0.000
Pvit_13957 Pogona vitticeps Pvit_13957 I 0.000
Smp_066930 Schistosoma mansoni Smp_066930 I 0.000
SMRZ_0001697001 Schistosoma margrebowiei SMRZ_0001697001 I 0.000
SMTD_0000672001 Schistosoma mattheei SMTD_0000672001 I 0.000
SPU_011280 Strongylocentrotus purpuratus SPU_011280 I 0.000
SPU_016114 Strongylocentrotus purpuratus SPU_016114 I 0.000
SROB_0001082301 Schistosoma rodhaini SROB_0001082301 I 0.000
TASK_0000640901 Taenia asiatica TASK_0000640901 I 0.000
tetur22g00570 Tetranychus urticae tetur22g00570 I 0.000
TRE_0000354701 Trichobilharzia regenti TRE_0000354701 I 0.000
TsM_000913800 Taenia solium TsM_000913800 I 0.000
TTAC_0000342701 Hydatigera taeniaeformis TTAC_0000342701 I 0.000
XP_002938068 Xenopus tropicalis XP_002938068 I 0.000