CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra011552 *(Brassica rapa)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	Bra011552	T191947_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.867	0.972
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.838	0.806
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.838	0.806
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.838	0.806
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.838	0.806
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.837	0.833
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.837	0.778
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.837	0.778
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.833	0.778
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.833	0.778
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.832	0.806
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.819	0.778
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.819	0.778
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.819	0.778
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.819	0.750
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.819	0.750
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.819	0.750
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.819	0.750
For this family, TFs with SR scores > 0.802* will likely have a similar motif*