OBART03G39750 (Oryza barthii)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 OBART03G39750 T194359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.833
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.807 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.807 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G39750.1 GATA 27 62

Links

Other GATA family TFs
Other Oryza barthii TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.841
30128.m008883 Ricinus communis 30128.m008883 N 0.814
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.809
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.815
GATA15 Arabidopsis thaliana AT3G06740 D 0.807
GATA17 Arabidopsis thaliana AT3G16870 I 0.823
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.823
GATA16 Arabidopsis thaliana AT5G49300 D 0.838
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.829
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.867
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.867
Bo00847s050 Brassica oleracea Bo00847s050 I 0.838
Bo1g055120 Brassica oleracea Bo1g055120 I 0.823
Bo1g122970 Brassica oleracea Bo1g122970 I 0.823
Bo1g147740 Brassica oleracea Bo1g147740 I 0.806
Bo3g068560 Brassica oleracea Bo3g068560 I 0.823
Bo5g123610 Brassica oleracea Bo5g123610 I 0.822
Bo7g092660 Brassica oleracea Bo7g092660 I 0.807
Bo7g104200 Brassica oleracea Bo7g104200 I 0.823
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.838
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.807
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.823
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.823
Bra012742 Brassica rapa Bra012742 I 0.823
Bra020650 Brassica rapa Bra020650 I 0.811
Bra021209 Brassica rapa Bra021209 I 0.823
Bra022184 Brassica rapa Bra022184 I 0.823
Bra033533 Brassica rapa Bra033533 I 0.823
Bra037421 Brassica rapa Bra037421 I 0.807
Bra040288 Brassica rapa Bra040288 I 0.806
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.856
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.829
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.823
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.807
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.823
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.823
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.823
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.807
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.838
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.856
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.856
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.841
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.838
Ca_02992 Cicer arietinum Ca_02992 I 0.836
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.841
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.842
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.828
Cla009422 Citrullus lanatus Cla009422 I 0.842
Cla022104 Citrullus lanatus Cla022104 I 0.838
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.842
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.838
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.838
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.842
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.856
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.856
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.838
F775_43556 Aegilops tauschii F775_43556 I 0.836
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.823
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.823
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.807
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.838
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.841
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.841
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.838
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.855
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.841
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.856
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.826
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.825
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.825
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.809
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.815
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.836
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.867
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.829
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.838
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.836
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.838
MDP0000309902 Malus domestica MDP0000309902 I 0.836
mgf003937m Mimulus guttatus mgf003937m I 0.838
mgf022078m Mimulus guttatus mgf022078m I 0.852
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.829
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.836
OB01G55040 Oryza brachyantha OB01G55040 I 0.829
OBART01G45830 Oryza barthii OBART01G45830 I 0.829
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.829
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.867
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.829
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.867
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.867
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.829
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.867
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.867
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.867
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.841
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.842
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.828
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.829
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.829
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.867
OS01G0976800 Oryza sativa OS01G0976800 I 0.829
OS03G0831200 Oryza sativa OS03G0831200 I 0.867
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.829
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.825
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.825
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.817
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.842
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.828
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.837
PGSC0003DMG400031828 Solanum tuberosum PGSC0003DMG400031828 N 0.808
PK18820.1 Cannabis sativa PK18820.1 I 0.842
PK21934.1 Cannabis sativa PK21934.1 I 0.840
Pm003128 Prunus mume Pm003128 I 0.814
Pm008287 Prunus mume Pm008287 I 0.838
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.856
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.836
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.836
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.838
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.814
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.856
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.856
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.836
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.836
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.825
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.829
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.838
Si002983m.g Setaria italica Si002983m.g I 0.829
Si037892m.g Setaria italica Si037892m.g I 0.825
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.837
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.828
Solyc09g075610.2 Solanum lycopersicum Solyc09g075610.2 N 0.808
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.842
TCM_004753 Theobroma cacao TCM_004753 I 0.841
TCM_021303 Theobroma cacao TCM_021303 I 0.838
TCM_026732 Theobroma cacao TCM_026732 I 0.856
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.838
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.823
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.807
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.823
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.829
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.829
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.836
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.829
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.842
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.829