PGSC0003DMG400003126 (Solanum tuberosum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 PGSC0003DMG400003126 T194700_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.867 0.914
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.867 0.914
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.857
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.857
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.857
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.857
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.843 0.886
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.843 0.886
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.839 0.857
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.857
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.832 0.829
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.829
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.829
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.829
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.800
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.800
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.800
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.771
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400008111 GATA 139 173
PGSC0003DMT400008112 GATA 227 261

Links

Other GATA family TFs
Other Solanum tuberosum TFs

610 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001068 Ricinus communis 29646.m001068 I 0.000
30174.m008698 Ricinus communis 30174.m008698 I 0.000
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.000
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I 0.000
AMTR_s00158p00056990 Amborella trichopoda AMTR_s00158p00056990 I 0.000
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I 0.000
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.000
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.000
BZIP68 Arabidopsis thaliana AT1G32150 D 0.000
BZIP16 Arabidopsis thaliana AT2G35530 D 0.000
GBF3 Arabidopsis thaliana AT2G46270 D 0.000
GBF2 Arabidopsis thaliana AT4G01120 D 0.000
GBF1 Arabidopsis thaliana AT4G36730 D 0.000
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.000
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.000
Bo1g005460 Brassica oleracea Bo1g005460 I 0.000
Bo4g010410 Brassica oleracea Bo4g010410 I 0.000
Bo4g038560 Brassica oleracea Bo4g038560 I 0.000
Bo9g003700 Brassica oleracea Bo9g003700 I 0.000
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I 0.000
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I 0.000
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.000
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.000
Bra004550 Brassica rapa Bra004550 I 0.000
Bra005335 Brassica rapa Bra005335 I 0.000
Bra010572 Brassica rapa Bra010572 I 0.000
Bra011701 Brassica rapa Bra011701 I 0.000
Bra037382 Brassica rapa Bra037382 I 0.000
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.000
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.000
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.000
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I 0.000
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.000
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I 0.000
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.000
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.000
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.000
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.000
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.000
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.000
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.000
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.000
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.000
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.000
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.000
Ca_01293 Cicer arietinum Ca_01293 I 0.000
Ca_15839 Cicer arietinum Ca_15839 I 0.000
Ca_17787 Cicer arietinum Ca_17787 I 0.000
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.000
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.000
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.000
Cla014415 Citrullus lanatus Cla014415 I 0.000
Cla021500 Citrullus lanatus Cla021500 I 0.000
CPRF3_PETCR Petroselinum crispum CPRF3_PETCR D 0.000
Cucsa.104970 Cucumis sativus Cucsa.104970 I 0.000
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.000
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.000
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.000
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.000
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I 0.000
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.000
F775_07803 Aegilops tauschii F775_07803 I 0.000
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.000
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I 0.000
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I 0.000
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.000
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.000
gene32024-v1.0-hybrid Fragaria vesca gene32024-v1.0-hybrid I 0.000
GLYMA02G06550 Glycine max GLYMA02G06550 I 0.000
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.000
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.000
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.000
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.000
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.000
GLYMA16G25600 Glycine max GLYMA16G25600 I 0.000
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.000
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.000
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I 0.000
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.000
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I 0.000
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I 0.000
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.000
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.000
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.000
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.000
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.000
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.000
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.000
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.000
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.000
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.000
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.000
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.000
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.000
Lus10014324.g Linum usitatissimum Lus10014324.g I 0.000
Lus10026033.g Linum usitatissimum Lus10026033.g I 0.000
MDP0000138052 Malus domestica MDP0000138052 I 0.000
MDP0000185553 Malus domestica MDP0000185553 I 0.000
MDP0000231274 Malus domestica MDP0000231274 I 0.000
MDP0000239688 Malus domestica MDP0000239688 I 0.000
MDP0000286846 Malus domestica MDP0000286846 I 0.000
MDP0000493795 Malus domestica MDP0000493795 I 0.000
MDP0000545420 Malus domestica MDP0000545420 I 0.000
mgf000639m Mimulus guttatus mgf000639m I 0.000
mgf003302m Mimulus guttatus mgf003302m I 0.000
mgf005151m Mimulus guttatus mgf005151m I 0.000
mgf008605m Mimulus guttatus mgf008605m I 0.000
mgf013423m Mimulus guttatus mgf013423m I 0.000
mgf014804m Mimulus guttatus mgf014804m I 0.000
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.000
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.000
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.000
MTR_8g077950 Medicago truncatula MTR_8g077950 I 0.000
OB01G34490 Oryza brachyantha OB01G34490 I 0.000
OB05G33790 Oryza brachyantha OB05G33790 I 0.000
OBART01G25300 Oryza barthii OBART01G25300 I 0.000
OBART05G26280 Oryza barthii OBART05G26280 I 0.000
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.000
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.000
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.000
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.000
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.000
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.000
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.000
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.000
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.000
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.000
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.000
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.000
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.000
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.000
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.000
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.000
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.000
OS01G0658900 Oryza sativa OS01G0658900 I 0.000
OS05G0569300 Oryza sativa OS05G0569300 I 0.000
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.000
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.000
Pavir.J01411 Panicum virgatum Pavir.J01411 I 0.000
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.000
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.000
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.000
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.000
PK07494.1 Cannabis sativa PK07494.1 I 0.000
PK09653.1 Cannabis sativa PK09653.1 D 0.000
Pm018422 Prunus mume Pm018422 I 0.000
Pm023132 Prunus mume Pm023132 I 0.000
Pm024103 Prunus mume Pm024103 I 0.000
Pm026586 Prunus mume Pm026586 I 0.000
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.000
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.000
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.000
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.000
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.000
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I 0.000
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.000
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.000
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.000
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.000
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.000
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.000
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I 0.000
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.000
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.000
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.000
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.000
Si001929m.g Setaria italica Si001929m.g I 0.000
Si022388m.g Setaria italica Si022388m.g I 0.000
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.000
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.000
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.000
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.000
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.000
TCM_000436 Theobroma cacao TCM_000436 I 0.000
TCM_005210 Theobroma cacao TCM_005210 I 0.000
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.000
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I 0.000
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.000
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.000
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.000
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.000
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.000
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.000
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.000
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.000
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.000
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.000
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.000