POPTR_0007s13700 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0007s13700 T194892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.856 0.917
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.856 0.917
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.832 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.828 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s13700.1 GATA 292 327

Links

Other GATA family TFs
Other Populus trichocarpa TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28095.m000094 Ricinus communis 28095.m000094 N 0.000
Aquca_075_00033 Aquilegia coerulea Aquca_075_00033 N 0.000
BZIP23 Arabidopsis thaliana AT2G16770 N 0.000
BGIOSGA034759 Oryza indica BGIOSGA034759 N 0.000
BGIOSGA036957 Oryza indica BGIOSGA036957 N 0.000
Bo1g006780 Brassica oleracea Bo1g006780 N 0.000
Bo4g125710 Brassica oleracea Bo4g125710 N 0.000
Bra011580 Brassica rapa Bra011580 N 0.000
BRADI2G21197 Brachypodium distachyon BRADI2G21197 N 0.000
Cagra.1043s0015 Capsella grandiflora Cagra.1043s0015 N 0.000
Carubv10018125m.g Capsella rubella Carubv10018125m.g N 0.000
cassava766.valid.m1 Manihot esculenta cassava766.valid.m1 N 0.000
cassava767.valid.m1 Manihot esculenta cassava767.valid.m1 N 0.000
cassava7721.valid.m1 Manihot esculenta cassava7721.valid.m1 N 0.000
Ciclev10028931m.g Citrus clementina Ciclev10028931m.g N 0.000
Cla016078 Citrullus lanatus Cla016078 N 0.000
Cla020585 Citrullus lanatus Cla020585 N 0.000
Cucsa.234250 Cucumis sativus Cucsa.234250 N 0.000
Cucsa.370550 Cucumis sativus Cucsa.370550 N 0.000
gene07554-v1.0-hybrid Fragaria vesca gene07554-v1.0-hybrid N 0.000
GRMZM2G033230 Zea mays GRMZM2G033230 N 0.000
GSMUA_Achr7G03840_001 Musa acuminata GSMUA_Achr7G03840_001 N 0.000
gw1.34.187.1 Physcomitrella patens gw1.34.187.1 N 0.000
LPERR11G02130 Leersia perrieri LPERR11G02130 N 0.000
LPERR12G02240 Leersia perrieri LPERR12G02240 N 0.000
Lus10005073.g Linum usitatissimum Lus10005073.g N 0.000
Lus10014121.g Linum usitatissimum Lus10014121.g N 0.000
Lus10027847.g Linum usitatissimum Lus10027847.g N 0.000
OB0044G10110 Oryza brachyantha OB0044G10110 N 0.000
OB12G12480 Oryza brachyantha OB12G12480 N 0.000
OBART11G02390 Oryza barthii OBART11G02390 N 0.000
OBART12G02110 Oryza barthii OBART12G02110 N 0.000
ONIVA11G02620 Oryza nivara ONIVA11G02620 N 0.000
orange1.1g024365m.g Citrus sinensis orange1.1g024365m.g N 0.000
ORUFI12G02510 Oryza rufipogon ORUFI12G02510 N 0.000
OS11G0139500 Oryza sativa OS11G0139500 N 0.000
PDK_20s1365351g001 Phoenix dactylifera PDK_20s1365351g001 N 0.000
Pm020862 Prunus mume Pm020862 N 0.000
POPTR_0001s05750 Populus trichocarpa POPTR_0001s05750 N 0.000
POPTR_0003s20320 Populus trichocarpa POPTR_0003s20320 N 0.000
PRUPE_ppa009913mg Prunus persica PRUPE_ppa009913mg N 0.000
SapurV1A.0009s0600 Salix purpurea SapurV1A.0009s0600 N 0.000
SapurV1A.0445s0220 Salix purpurea SapurV1A.0445s0220 N 0.000
SELMODRAFT_409920 Selaginella moellendorffii SELMODRAFT_409920 N 0.000
SELMODRAFT_414462 Selaginella moellendorffii SELMODRAFT_414462 N 0.000
TCM_042360 Theobroma cacao TCM_042360 N 0.000
Traes_7DL_7DDA16622 Triticum aestivum Traes_7DL_7DDA16622 N 0.000
VIT_03s0038g02420 Vitis vinifera VIT_03s0038g02420 N 0.000
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N 0.000