Cagra.1742s0041 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.1742s0041 T196426_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.867 1.000
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.848 0.917
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1742s0041.1.p GATA 232 267

Links

Other GATA family TFs
Other Capsella grandiflora TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003097 Aedes aegypti AAEL003097 N 0.000
AALB004109 Anopheles albimanus AALB004109 N 0.000
Aan_R005984 Calypte anna Aan_R005984 N 0.000
AARA007796 Anopheles arabiensis AARA007796 N 0.000
AATE013496 Anopheles atroparvus AATE013496 N 0.000
ACEP21389 Atta cephalotes ACEP21389 N 0.000
ACHR000042 Anopheles christyi ACHR000042 N 0.000
ACOM025306 Anopheles coluzzii ACOM025306 N 0.000
ACYPI47146 Acyrthosiphon pisum ACYPI47146 N 0.000
ADAC004139 Anopheles darlingi ADAC004139 N 0.000
Afo_R003276 Aptenodytes forsteri Afo_R003276 N 0.000
AGAP007133 Anopheles gambiae AGAP007133 N 0.000
Alligator_sinensis_CCG015084.1 Alligator sinensis Alligator_sinensis_CCG015084.1 N 0.000
AMEC009276 Anopheles melas AMEC009276 N 0.000
AMEM004763 Anopheles merus AMEM004763 N 0.000
AMIN011274 Anopheles minimus AMIN011274 N 0.000
AQUA002064 Anopheles quadriannulatus AQUA002064 N 0.000
CapteG124203 Capitella teleta CapteG124203 N 0.000
CGI_10022084 Crassostrea gigas CGI_10022084 N 0.000
DAPPUDRAFT_312030 Daphnia pulex DAPPUDRAFT_312030 N 0.000
ENSAMEG00000006258 Ailuropoda melanoleuca ENSAMEG00000006258 N 0.000
ENSAMXG00000003636 Astyanax mexicanus ENSAMXG00000003636 N 0.000
ENSAMXG00000013350 Astyanax mexicanus ENSAMXG00000013350 N 0.000
ENSAMXG00000020082 Astyanax mexicanus ENSAMXG00000020082 N 0.000
CAMTA2 Bos taurus ENSBTAG00000008591 N 0.000
ENSBTAP00000011330-D1 Bos grunniens ENSBTAP00000011330-D1 N 0.000
CAMTA2 Canis familiaris ENSCAFG00000015674 N 0.000
CAMTA1 Canis familiaris ENSCAFG00000019650 N 0.000
CAMTA2 Callithrix jacchus ENSCJAG00000011609 N 0.000
CAMTA2 Cavia porcellus ENSCPOG00000007319 N 0.000
CAMTA1 Cavia porcellus ENSCPOG00000014759 N 0.000
ENSCSAG00000012903 Chlorocebus sabaeus ENSCSAG00000012903 N 0.000
camta1b Danio rerio ENSDARG00000007824 N 0.000
camta1a Danio rerio ENSDARG00000077428 N 0.000
camta2 Danio rerio ENSDARG00000092799 N 0.000
CAMTA2 Dasypus novemcinctus ENSDNOG00000036357 N 0.000
Camta1 Dipodomys ordii ENSDORG00000003017 N 0.000
Camta2 Dipodomys ordii ENSDORG00000011763 N 0.000
CAMTA2 Equus caballus ENSECAG00000019370 N 0.000
CAMTA1 Equus caballus ENSECAG00000020792 N 0.000
CAMTA1 Echinops telfairi ENSETEG00000006373 N 0.000
ENSFALG00000009834 Ficedula albicollis ENSFALG00000009834 N 0.000
CAMTA2 Felis catus ENSFCAG00000008698 N 0.000
ENSFCAG00000022960 Felis catus ENSFCAG00000022960 N 0.000
CAMTA2 Homo sapiens ENSG00000108509 N 0.000
CAMTA1 Homo sapiens ENSG00000171735 N 0.000
ENSGACG00000001106 Gasterosteus aculeatus ENSGACG00000001106 N 0.000
camta1b Gasterosteus aculeatus ENSGACG00000007914 N 0.000
ENSGALG00000000610 Gallus gallus ENSGALG00000000610 N 0.000
CAMTA1 Gorilla gorilla ENSGGOG00000003577 N 0.000
CAMTA2 Gorilla gorilla ENSGGOG00000009188 N 0.000
ENSGMOG00000017650 Gadus morhua ENSGMOG00000017650 N 0.000
ENSGMOG00000019408 Gadus morhua ENSGMOG00000019408 N 0.000
ENSLACG00000014089 Latimeria chalumnae ENSLACG00000014089 N 0.000
ENSLACG00000014574 Latimeria chalumnae ENSLACG00000014574 N 0.000
CAMTA2 Loxodonta africana ENSLAFG00000012042 N 0.000
ENSLOCG00000013712 Lepisosteus oculatus ENSLOCG00000013712 N 0.000
ENSMEUG00000007952 Macropus eugenii ENSMEUG00000007952 N 0.000
CAMTA2 Microcebus murinus ENSMICG00000012537 N 0.000
CAMTA2 Myotis lucifugus ENSMLUG00000014019 N 0.000
CAMTA2 Macaca mulatta ENSMMUG00000009176 N 0.000
CAMTA2 Monodelphis domestica ENSMODG00000005219 N 0.000
ENSMODG00000005842 Monodelphis domestica ENSMODG00000005842 N 0.000
ENSMPUG00000006733 Mustela putorius furo ENSMPUG00000006733 N 0.000
ENSMPUG00000011010 Mustela putorius furo ENSMPUG00000011010 N 0.000
Camta1 Mus musculus ENSMUSG00000014592 N 0.000
Camta2 Mus musculus ENSMUSG00000040712 N 0.000
ENSNLEG00000008706 Nomascus leucogenys ENSNLEG00000008706 N 0.000
ENSNLEG00000017452 Nomascus leucogenys ENSNLEG00000017452 N 0.000
ENSOANG00000030450 Ornithorhynchus anatinus ENSOANG00000030450 N 0.000
ENSOARG00000004897 Ovis aries ENSOARG00000004897 N 0.000
CAMTA2 Oryctolagus cuniculus ENSOCUG00000001109 N 0.000
CAMTA1 Otolemur garnettii ENSOGAG00000009792 N 0.000
CAMTA2 Otolemur garnettii ENSOGAG00000014734 N 0.000
ENSONIG00000004505 Oreochromis niloticus ENSONIG00000004505 N 0.000
ENSONIG00000019368 Oreochromis niloticus ENSONIG00000019368 N 0.000
CAMTA1 Ochotona princeps ENSOPRG00000015968 N 0.000
camta1b Oryzias latipes ENSORLG00000016337 N 0.000
ENSP00000306522-D1 Bos grunniens ENSP00000306522-D1 N 0.000
ENSP00000321813 Macaca fascicularis ENSP00000321813 N 0.000
ENSPANG00000024316 Papio anubis ENSPANG00000024316 N 0.000
ENSPFOG00000000859 Poecilia formosa ENSPFOG00000000859 N 0.000
ENSPFOG00000004225 Poecilia formosa ENSPFOG00000004225 N 0.000
ENSPFOG00000016244 Poecilia formosa ENSPFOG00000016244 N 0.000
ENSPPYG00000001932 Pongo abelii ENSPPYG00000001932 N 0.000
ENSPPYG00000007853 Pongo abelii ENSPPYG00000007853 N 0.000
ENSPSIG00000004616 Pelodiscus sinensis ENSPSIG00000004616 N 0.000
CAMTA1 Pan troglodytes ENSPTRG00000000096 N 0.000
CAMTA2 Pan troglodytes ENSPTRG00000023129 N 0.000
CAMTA2 Pteropus vampyrus ENSPVAG00000003768 N 0.000
CAMTA1 Pteropus vampyrus ENSPVAG00000005390 N 0.000
Camta2 Rattus norvegicus ENSRNOG00000004283 N 0.000
Camta1 Rattus norvegicus ENSRNOG00000018602 N 0.000
CAMTA2 Sorex araneus ENSSARG00000004137 N 0.000
ENSSHAG00000006160 Sarcophilus harrisii ENSSHAG00000006160 N 0.000
ENSSTOG00000003897 Ictidomys tridecemlineatus ENSSTOG00000003897 N 0.000
ENSSTOG00000011183 Ictidomys tridecemlineatus ENSSTOG00000011183 N 0.000
CAMTA1 Tupaia belangeri ENSTBEG00000001406 N 0.000
CAMTA2 Tupaia belangeri ENSTBEG00000003130 N 0.000
CAMTA1 Taeniopygia guttata ENSTGUG00000002566 N 0.000
ENSTNIG00000001909 Tetraodon nigroviridis ENSTNIG00000001909 N 0.000
ENSTNIG00000003621 Tetraodon nigroviridis ENSTNIG00000003621 N 0.000
ENSTNIG00000012546 Tetraodon nigroviridis ENSTNIG00000012546 N 0.000
ENSTRUG00000000888 Takifugu rubripes ENSTRUG00000000888 N 0.000
camta1b Takifugu rubripes ENSTRUG00000010941 N 0.000
camta1a Takifugu rubripes ENSTRUG00000013622 N 0.000
ENSTSYG00000007714 Tarsius syrichta ENSTSYG00000007714 N 0.000
CAMTA2 Tursiops truncatus ENSTTRG00000001303 N 0.000
CAMTA1 Tursiops truncatus ENSTTRG00000010366 N 0.000
ENSXMAG00000001955 Xiphophorus maculatus ENSXMAG00000001955 N 0.000
ENSXMAG00000018742 Xiphophorus maculatus ENSXMAG00000018742 N 0.000
e_gw.96.31.1 Branchiostoma floridae e_gw.96.31.1 N 0.000
GD10658 Drosophila simulans FBgn0182425 N 0.000
Camta Drosophila melanogaster FBgn0259234 N 0.000
GA30460 Drosophila pseudoobscura FBgn0264597 N 0.000
fgenesh2_pg.scaffold_96000095 Branchiostoma floridae fgenesh2_pg.scaffold_96000095 N 0.000
Gfo_R002636 Geospiza fortis Gfo_R002636 N 0.000
Hsal_08954--XP_001120489.1_APIME Harpegnathos saltator Hsal_08954--XP_001120489.1_APIME N 0.000
ISCW018640 Ixodes scapularis ISCW018640 N 0.000
LCUP001199 Lucilia cuprina LCUP001199 N 0.000
MDOA011429 Musca domestica MDOA011429 N 0.000
Myotis_brandtii_CAMTA2_10007480 Myotis brandtii Myotis_brandtii_CAMTA2_10007480 N 0.000
Ogr01933 Ophisaurus gracilis Ogr01933 N 0.000
PHUM466620 Pediculus humanus PHUM466620 N 0.000
PPAI004941 Phlebotomus papatasi PPAI004941 N 0.000
Pvit_07906 Pogona vitticeps Pvit_07906 N 0.000
RPRC011455 Rhodnius prolixus RPRC011455 N 0.000
Sakowv30004245m.g Saccoglossus kowalevskii Sakowv30004245m.g N 0.000
SMAR001697 Strigamia maritima SMAR001697 N 0.000
TC012001 Tribolium castaneum TC012001 N 0.000
camta2 Xenopus tropicalis XB-GENE-1033052 N 0.000
XP_002933905 Xenopus tropicalis XP_002933905 N 0.000