Carubv10017765m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10017765m.g T196464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017765m GATA 150 185

Links

Other GATA family TFs
Other Capsella rubella TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29634.m002146 Ricinus communis 29634.m002146 I 0.867
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.825
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.867
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.853
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.853
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.853
GATA20 Arabidopsis thaliana AT2G18380 D 0.825
GATA18 Arabidopsis thaliana AT3G50870 I 0.867
GATA19 Arabidopsis thaliana AT4G36620 D 0.867
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.853
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.848
GATA15 Oryza indica BGIOSGA020424 I 0.848
Bo1g005530 Brassica oleracea Bo1g005530 I 0.856
Bo3g019610 Brassica oleracea Bo3g019610 I 0.811
Bo7g010220 Brassica oleracea Bo7g010220 I 0.825
Bo7g064860 Brassica oleracea Bo7g064860 I 0.867
Bo7g100580 Brassica oleracea Bo7g100580 I 0.867
Bo7g118030 Brassica oleracea Bo7g118030 I 0.867
Bo8g080330 Brassica oleracea Bo8g080330 I 0.867
Bo9g026020 Brassica oleracea Bo9g026020 I 0.820
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.825
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.867
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.867
Bra006851 Brassica rapa Bra006851 I 0.811
Bra010563 Brassica rapa Bra010563 I 0.862
Bra011695 Brassica rapa Bra011695 I 0.856
Bra012080 Brassica rapa Bra012080 I 0.836
Bra012883 Brassica rapa Bra012883 I 0.867
Bra017766 Brassica rapa Bra017766 I 0.867
Bra036854 Brassica rapa Bra036854 I 0.867
Bra037221 Brassica rapa Bra037221 I 0.825
Bra039614 Brassica rapa Bra039614 I 0.825
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.862
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.853
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.867
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.867
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.825
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.867
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.867
Ca_02038 Cicer arietinum Ca_02038 I 0.867
Ca_16057 Cicer arietinum Ca_16057 I 0.853
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.867
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.867
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.867
Cla014435 Citrullus lanatus Cla014435 I 0.842
Cla014810 Citrullus lanatus Cla014810 I 0.867
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.867
Cucsa.127470 Cucumis sativus Cucsa.127470 I 0.842
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.867
F775_00859 Aegilops tauschii F775_00859 I 0.853
F775_42893 Aegilops tauschii F775_42893 I 0.862
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.867
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.867
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.865
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.867
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.856
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.867
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.867
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.867
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.867
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.853
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.825
GRMZM2G397616 Zea mays GRMZM2G397616 I 0.809
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.806
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.853
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.853
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I 0.811
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.853
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.853
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.853
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.848
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.867
MDP0000253174 Malus domestica MDP0000253174 I 0.867
MDP0000310271 Malus domestica MDP0000310271 I 0.867
mgf023982m Mimulus guttatus mgf023982m I 0.867
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.853
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.862
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.867
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.818
OB01G34710 Oryza brachyantha OB01G34710 I 0.853
OB05G34480 Oryza brachyantha OB05G34480 I 0.853
OBART01G25510 Oryza barthii OBART01G25510 I 0.853
OBART05G26150 Oryza barthii OBART05G26150 I 0.813
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.853
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.813
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.848
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.853
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.848
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.848
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.853
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.848
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.853
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.853
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.848
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.853
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.848
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.848
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.853
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.848
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.848
OS01G0662800 Oryza sativa OS01G0662800 I 0.853
OS05G0567900 Oryza sativa OS05G0567900 I 0.848
GATA15 Oryza sativa OS05G0578900 I 0.848
Pavir.Ca00998 Panicum virgatum Pavir.Ca00998 I 0.862
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.862
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.867
Pavir.J03293 Panicum virgatum Pavir.J03293 I 0.853
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.862
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.853
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.867
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.867
PK24471.1 Cannabis sativa PK24471.1 I 0.867
Pm026628 Prunus mume Pm026628 I 0.867
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.867
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.867
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.867
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.867
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.867
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.853
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.848
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.862
Si022366m.g Setaria italica Si022366m.g I 0.862
Si024214m.g Setaria italica Si024214m.g I 0.853
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.867
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.867
TCM_000376 Theobroma cacao TCM_000376 I 0.867
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.867
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.825
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.867
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.853
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.862
MNP Vitis vinifera VIT_04s0023g01840 I 0.867