cassava1375.valid.m1 (Manihot esculenta)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 cassava1375.valid.m1 T202043_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava1375.valid.m1 GRAS 46 470

Links

Other GRAS family TFs
Other Manihot esculenta TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30024.m001746 Ricinus communis 30024.m001746 N 0.773
30131.m007244 Ricinus communis 30131.m007244 N 0.939
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.793
SCL3 Arabidopsis thaliana AT1G50420 N 0.725
Bo3g179450 Brassica oleracea Bo3g179450 N 0.705
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.707
Bra014251 Brassica rapa Bra014251 N 0.705
Bra018848 Brassica rapa Bra018848 N 0.711
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.727
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.725
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 1.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.763
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.920
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.744
Ca_11133 Cicer arietinum Ca_11133 N 0.754
Ca_27441 Cicer arietinum Ca_27441 N 0.758
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.766
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.766
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.780
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.868
Cla006433 Citrullus lanatus Cla006433 N 0.727
Cla020893 Citrullus lanatus Cla020893 N 0.815
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.714
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.815
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.766
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.824
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.850
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.763
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.716
gene14438-v1.0-hybrid Fragaria vesca gene14438-v1.0-hybrid N 0.796
GLYMA01G43620 Glycine max GLYMA01G43620 N 0.711
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.747
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.741
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.791
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.837
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.821
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.739
Lus10019773.g Linum usitatissimum Lus10019773.g N 0.771
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.705
Lus10024177.g Linum usitatissimum Lus10024177.g N 0.785
Lus10039562.g Linum usitatissimum Lus10039562.g N 0.788
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.725
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.755
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.871
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.780
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.755
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.730
PK02707.1 Cannabis sativa PK02707.1 N 0.802
Pm012190 Prunus mume Pm012190 N 0.791
Pm016466 Prunus mume Pm016466 N 0.807
Pm029840 Prunus mume Pm029840 N 0.807
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.901
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.865
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.756
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.788
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.807
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.865
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.759
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.884
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.730
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.747
TCM_040833 Theobroma cacao TCM_040833 N 0.813
TCM_042392 Theobroma cacao TCM_042392 N 0.848
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.727
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.799
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.839