HOXC13 (Canis familiaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCAFG00000006648 T207594_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.867 1.000
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.867 1.000
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.867 1.000
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.867 1.000
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.867 1.000
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.867 1.000
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.867 1.000
Hoxa13
M00473_2.00 		Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126 		0.862 0.930
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.862 0.930
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.862 0.930
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.862 0.930
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.862 0.930
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.862 0.930
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.862 0.930
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.862 0.930
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.862 0.930
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.862 0.930
Hoxa13
M09202_2.00 		Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C 		0.862 0.930
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.862 0.930
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.862 0.930
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.862 0.930
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.862 0.930
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.862 0.930
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.862 0.930
HOXD13
M00299_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_REF 		0.834 0.860
Hoxd13
M00394_2.00 		Mus musculus
NWTHRYDDN
NHHRYDAWN		 PBM
Berger et al.(2008)
Hoxd13_2356 		0.834 0.860
HOXD13
M03141_2.00 		Homo sapiens
DTTTTATKRS
SYMATAAAAH		 SELEX
Jolma et al.(2013)
HOXD13_1 		0.834 0.860
HOXD13
M03142_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXD13_2 		0.834 0.860
Hoxd13
M03247_2.00 		Mus musculus
DKTTTATTRS
SYAATAAAMH		 SELEX
Jolma et al.(2013)
Hoxd13_1 		0.834 0.860
Hoxd13
M03248_2.00 		Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH		 SELEX
Jolma et al.(2013)
Hoxd13_2 		0.834 0.860
HOXD13
M05122_2.00 		Homo sapiens
GKTTTATKGSS
SSCMATAAAMC		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1 		0.834 0.860
HOXD13
M05123_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2 		0.834 0.860
HOXD13
M10689_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD13_Q6 		0.834 0.860
HOXD13
M00295_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_N298S 		0.834 0.860
HOXD13
M05124_2.00 		Homo sapiens
DDTTTATTRBB
VVYAATAAAHH		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1 		0.834 0.860
HOXD13
M05125_2.00 		Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2 		0.834 0.860
HOXD13
M00300_2.00 		Homo sapiens
WTTTATDR
YHATAAAW		 PBM
Barrera et al.(2016)
HOXD13_S316C 		0.834 0.842
HOXD13
M00293_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_I297V 		0.834 0.842
hoxd13a
M02081_2.00 		Danio rerio
WTTTATDR
YHATAAAW		 PBM
Weirauch et al.(2014)
pTH6143 		0.832 0.825
HOXD13
M00298_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_R306W 		0.826 0.842
HOXD13
M00294_2.00 		Homo sapiens
THGTWAAW
WTTWACDA		 PBM
Barrera et al.(2016)
HOXD13_I322L 		0.816 0.842
HOXB13
M02092_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Weirauch et al.(2014)
pTH5808 		0.713 0.807
Hoxb13
M00505_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb13_3479 		0.713 0.807
HOXB13
M03175_2.00 		Homo sapiens
DTTTTATKGG
CCMATAAAAH		 SELEX
Jolma et al.(2013)
HOXB13_1 		0.713 0.807
HOXB13
M03176_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXB13_2 		0.713 0.807
HOXB13
M05201_2.00 		Homo sapiens
DTTTTATKGGN
NCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1 		0.713 0.807
HOXB13
M05202_2.00 		Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2 		0.713 0.807
HOXB13
M09149_2.00 		Homo sapiens
TTTTATDRSN
NSYHATAAAA		 Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A 		0.713 0.807
HOXB13
M05203_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX 		0.713 0.807
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.606 0.561
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.606 0.561
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.606 0.561
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.606 0.561
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.606 0.561
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.606 0.561
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.606 0.561
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.606 0.561
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.606 0.561
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.606 0.561
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.606 0.561
HOXD13
M00296_2.00 		Homo sapiens
GKATAAAH
DTTTATMC		 PBM
Barrera et al.(2016)
HOXD13_Q325K 		0.601 0.842
HOXD13
M00297_2.00 		Homo sapiens
NWTWRKNNNN
NNNNMYWAWN		 PBM
Barrera et al.(2016)
HOXD13_Q325R 		0.601 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000009935 Homeodomain 255 311

Links

Other Homeodomain family TFs
Other Canis familiaris TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB010774 Anopheles albimanus AALB010774 N
AATE010517 Anopheles atroparvus AATE010517 N
ACHR009406 Anopheles christyi ACHR009406 N
ACOM023178 Anopheles coluzzii ACOM023178 N
ACOM031313 Anopheles coluzzii ACOM031313 N
ACUA017712 Anopheles culicifacies ACUA017712 N
ACUA018515 Anopheles culicifacies ACUA018515 N
ADAC000821 Anopheles darlingi ADAC000821 N
AEPI000126 Anopheles epiroticus AEPI000126 N
AEPI002968 Anopheles epiroticus AEPI002968 N
AFAF008679 Anopheles farauti AFAF008679 N
Afo_R012244 Aptenodytes forsteri Afo_R012244 N
AFUN007608 Anopheles funestus AFUN007608 N
Alligator_sinensis_CCG010633.1 Alligator sinensis Alligator_sinensis_CCG010633.1 N
AMAM014256 Anopheles maculatus AMAM014256 N
AMEC006413 Anopheles melas AMEC006413 N
AMEC007961 Anopheles melas AMEC007961 N
AMEM017070 Anopheles merus AMEM017070 N
AMIN011087 Anopheles minimus AMIN011087 N
ANCCAN_03409 Ancylostoma caninum ANCCAN_03409 N
AQUA001991 Anopheles quadriannulatus AQUA001991 N
AQUA007256 Anopheles quadriannulatus AQUA007256 N
ASIS020685 Anopheles sinensis ASIS020685 N
ASTEI02549 Anopheles stephensi ASTEI02549 N
A_05161 Schistosoma haematobium A_05161 N
A_05714 Schistosoma haematobium A_05714 N
BRADI1G63680 Brachypodium distachyon BRADI1G63680 N
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N
BTMF_0000360801 Brugia timori BTMF_0000360801 N
Carubv10007218m.g Capsella rubella Carubv10007218m.g N
Ca_08015 Cicer arietinum Ca_08015 N
Cla017771 Citrullus lanatus Cla017771 N
CLEC001113 Cimex lectularius CLEC001113 N
CLEC003989 Cimex lectularius CLEC003989 N
CPIJ004950 Culex quinquefasciatus CPIJ004950 N
CpipJ_CPIJ004950 Culex pipiens CpipJ_CPIJ004950 N
D917_09256 Trichinella nativa D917_09256 I
DICVIV_11023 Dictyocaulus viviparus DICVIV_11023 N
EEL_0000211501 Elaeophora elaphi EEL_0000211501 N
EMIHUDRAFT_217694 Emiliania huxleyi EMIHUDRAFT_217694 N
ENSFALG00000010250 Ficedula albicollis ENSFALG00000010250 N
DLX3 Felis catus ENSFCAG00000002643 N
DLX1 Loxodonta africana ENSLAFG00000003551 N
DLX3 Loxodonta africana ENSLAFG00000028511 N
ENSMGAG00000010118 Meleagris gallopavo ENSMGAG00000010118 N
ENSMGAG00000016039 Meleagris gallopavo ENSMGAG00000016039 N
ENSOANG00000010094 Ornithorhynchus anatinus ENSOANG00000010094 N
ENSPMAG00000010155 Petromyzon marinus ENSPMAG00000010155 N
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I
ENSTGUG00000001643 Taeniopygia guttata ENSTGUG00000001643 N
EVEC_0000608301 Enterobius vermicularis EVEC_0000608301 N
EVEC_0001263401 Enterobius vermicularis EVEC_0001263401 N
F775_01938 Aegilops tauschii F775_01938 N
F775_10961 Aegilops tauschii F775_10961 N
fgenesh2_pg.scaffold_94000102 Branchiostoma floridae fgenesh2_pg.scaffold_94000102 N
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N
GPUH_0000517501 Gongylonema pulchrum GPUH_0000517501 N
GPUH_0002121901 Gongylonema pulchrum GPUH_0002121901 N
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N
HHAL000970-PA Halyomorpha halys HHAL000970-PA N
HMEL008501 Heliconius melpomene HMEL008501 N
ISCW020503 Ixodes scapularis ISCW020503 N
LCUP002617 Lucilia cuprina LCUP002617 N
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N
LLOJ002764 Lutzomyia longipalpis LLOJ002764 N
LPERR08G06500 Leersia perrieri LPERR08G06500 N
Lus10013960.g Linum usitatissimum Lus10013960.g N
MCINX006168 Melitaea cinxia MCINX006168 N
Minc14799 Meloidogyne incognita Minc14799 N
MTR_4g088065 Medicago truncatula MTR_4g088065 N
Myotis_brandtii_DLX3_10017059 Myotis brandtii Myotis_brandtii_DLX3_10017059 N
NEMVEDRAFT_v1g101680 Nematostella vectensis NEMVEDRAFT_v1g101680 N
nLs.2.1.2.g07663 Litomosoides sigmodontis nLs.2.1.2.g07663 N
nOo.2.0.1.g04758 Onchocerca ochengi nOo.2.0.1.g04758 N
nOo.2.0.1.g09965 Onchocerca ochengi nOo.2.0.1.g09965 N
nRc.2.0.1.g40851 Romanomermis culicivorax nRc.2.0.1.g40851 N
OGLUM06G16330 Oryza glumaepatula OGLUM06G16330 N
OLONG_012459 Oryza longistaminata OLONG_012459 N
OPUNC01G25730 Oryza punctata OPUNC01G25730 N
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N
Pavir.J05483 Panicum virgatum Pavir.J05483 N
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N
PPA25533 Pristionchus pacificus PPA25533 N
RPRC002292 Rhodnius prolixus RPRC002292 N
SBAD_0000398601 Soboliphyme baturini SBAD_0000398601 N
scaffold54-EXSNAP2012.71 Pristionchus exspectatus scaffold54-EXSNAP2012.71 N
SCUD_0001639501 Schistosoma curassoni SCUD_0001639501 N
Smp_136900 Schistosoma mansoni Smp_136900 N
SMRZ_0001858401 Schistosoma margrebowiei SMRZ_0001858401 N
SPER_0000821201 Spirometra erinaceieuropaei SPER_0000821201 N
SPER_0001680701 Spirometra erinaceieuropaei SPER_0001680701 N
SROB_0001224301 Schistosoma rodhaini SROB_0001224301 N
SVUK_0001919201 Strongylus vulgaris SVUK_0001919201 N
TELCIR_17471 Teladorsagia circumcincta TELCIR_17471 N
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N
Traes_4BL_085791CB2 Triticum aestivum Traes_4BL_085791CB2 N
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N
TRE_0000521801 Trichobilharzia regenti TRE_0000521801 N
TRE_0000614101 Trichobilharzia regenti TRE_0000614101 N
TRIUR3_29318 Triticum urartu TRIUR3_29318 N
TRIUR3_32002 Triticum urartu TRIUR3_32002 N
TRIUR3_33331 Triticum urartu TRIUR3_33331 N
WUBG_02918 Wuchereria bancrofti WUBG_02918 N