ENSCING00000005828 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000005828 T207827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.862 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.862 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.862 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.862 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.862 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.862 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.862 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.862 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.862 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.861 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.861 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.861 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.861 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.861 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.861 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.861 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.855 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000012025 Homeodomain 205 261

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00022p00217850 Amborella trichopoda AMTR_s00022p00217850 I 0.000
TGA9 Arabidopsis thaliana AT1G08320 D 0.000
BGIOSGA007726 Oryza indica BGIOSGA007726 I 0.000
Bo5g008940 Brassica oleracea Bo5g008940 I 0.000
Bo8g112540 Brassica oleracea Bo8g112540 I 0.000
Bostr.25219s0112 Boechera stricta Bostr.25219s0112 I 0.000
Bra018634 Brassica rapa Bra018634 I 0.000
Bra031622 Brassica rapa Bra031622 I 0.000
Cagra.4395s0022 Capsella grandiflora Cagra.4395s0022 I 0.000
Carubv10011576m.g Capsella rubella Carubv10011576m.g I 0.000
Ca_07292 Cicer arietinum Ca_07292 N 0.000
Ciclev10028428m.g Citrus clementina Ciclev10028428m.g I 0.000
estExt_gwp_gw1.C_1260170 Physcomitrella patens estExt_gwp_gw1.C_1260170 N 0.000
Eucgr.A02436 Eucalyptus grandis Eucgr.A02436 I 0.000
fgenesh1_pg.scaffold_30000177 Physcomitrella patens fgenesh1_pg.scaffold_30000177 N 0.000
fgenesh1_pm.C_scaffold_1000665 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000665 I 0.000
fgenesh1_pm.scaffold_257000017 Physcomitrella patens fgenesh1_pm.scaffold_257000017 N 0.000
gene14220-v1.0-hybrid Fragaria vesca gene14220-v1.0-hybrid I 0.000
GLYMA02G30220 Glycine max GLYMA02G30220 I 0.000
GLYMA10G11985 Glycine max GLYMA10G11985 I 0.000
GLYMA12G30990 Glycine max GLYMA12G30990 I 0.000
GRMZM2G019907 Zea mays GRMZM2G019907 I 0.000
GRMZM2G125243 Zea mays GRMZM2G125243 I 0.000
GSMUA_Achr3G11150_001 Musa acuminata GSMUA_Achr3G11150_001 I 0.000
GSMUA_Achr9G27700_001 Musa acuminata GSMUA_Achr9G27700_001 I 0.000
MDP0000145555 Malus domestica MDP0000145555 I 0.000
MDP0000250967 Malus domestica MDP0000250967 I 0.000
MDP0000301884 Malus domestica MDP0000301884 I 0.000
MTR_0126s0080 Medicago truncatula MTR_0126s0080 I 0.000
OB01G43330 Oryza brachyantha OB01G43330 I 0.000
OB05G28710 Oryza brachyantha OB05G28710 N 0.000
OBART02G07230 Oryza barthii OBART02G07230 I 0.000
OGLUM02G07240 Oryza glumaepatula OGLUM02G07240 I 0.000
OLONG_010393 Oryza longistaminata OLONG_010393 I 0.000
OMERI02G08300 Oryza meridionalis OMERI02G08300 I 0.000
ONIVA02G08860 Oryza nivara ONIVA02G08860 I 0.000
OPUNC02G06400 Oryza punctata OPUNC02G06400 I 0.000
orange1.1g036039m.g Citrus sinensis orange1.1g036039m.g I 0.000
ORGLA02G0067600 Oryza glaberrima ORGLA02G0067600 I 0.000
OS02G0194900 Oryza sativa OS02G0194900 I 0.000
Pavir.Eb03507 Panicum virgatum Pavir.Eb03507 I 0.000
Pavir.J04905 Panicum virgatum Pavir.J04905 I 0.000
Pavir.J27823 Panicum virgatum Pavir.J27823 I 0.000
PGSC0003DMG400012962 Solanum tuberosum PGSC0003DMG400012962 I 0.000
PK08582.1 Cannabis sativa PK08582.1 I 0.000
Pm029028 Prunus mume Pm029028 I 0.000
POPTR_0003s19410 Populus trichocarpa POPTR_0003s19410 I 0.000
PRUPE_ppa019842mg Prunus persica PRUPE_ppa019842mg I 0.000
SapurV1A.0009s1200 Salix purpurea SapurV1A.0009s1200 I 0.000
SapurV1A.0574s0080 Salix purpurea SapurV1A.0574s0080 I 0.000
Sb03g037560 Sorghum bicolor Sb03g037560 I 0.000
SELMODRAFT_231344 Selaginella moellendorffii SELMODRAFT_231344 I 0.000
Si001292m.g Setaria italica Si001292m.g I 0.000
Solyc05g009660.2 Solanum lycopersicum Solyc05g009660.2 I 0.000
Solyc06g074320.2 Solanum lycopersicum Solyc06g074320.2 I 0.000
Thhalv10007490m.g Eutrema salsugineum Thhalv10007490m.g I 0.000