IRX5 (Callithrix jacchus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCJAG00000012968 T207997_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.867 1.000
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.867 1.000
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.867 1.000
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.867 1.000
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.867 1.000
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.867 1.000
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.815 0.930
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.815 0.930
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.815 0.930
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.780 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000023807 Homeodomain 114 173

Links

Other Homeodomain family TFs
Other Callithrix jacchus TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27446.m000475 Ricinus communis 27446.m000475 I 0.000
27904.m000217 Ricinus communis 27904.m000217 I 0.000
29983.m003147 Ricinus communis 29983.m003147 I 0.000
30190.m011321 Ricinus communis 30190.m011321 I 0.000
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.000
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.000
ERF084 Arabidopsis thaliana AT1G80580 N 0.000
ERF9 Arabidopsis thaliana AT5G44210 D 0.000
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.000
BGIOSGA017796 Oryza indica BGIOSGA017796 I 0.000
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.000
Bo2g095830 Brassica oleracea Bo2g095830 N 0.000
Bo2g122260 Brassica oleracea Bo2g122260 I 0.000
Bo3g066710 Brassica oleracea Bo3g066710 I 0.000
Bo3g074840 Brassica oleracea Bo3g074840 I 0.000
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.000
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.000
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.000
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.000
Bra001588 Brassica rapa Bra001588 I 0.000
Bra001784 Brassica rapa Bra001784 I 0.000
Bra006325 Brassica rapa Bra006325 I 0.000
Bra008460 Brassica rapa Bra008460 N 0.000
Bra015266 Brassica rapa Bra015266 I 0.000
Bra036016 Brassica rapa Bra036016 I 0.000
BRADI2G21060 Brachypodium distachyon BRADI2G21060 I 0.000
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.000
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.000
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.000
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.000
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.000
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.000
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.000
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.000
Ca_11261 Cicer arietinum Ca_11261 I 0.000
Ca_20041 Cicer arietinum Ca_20041 I 0.000
Ca_20544 Cicer arietinum Ca_20544 I 0.000
Ca_22534 Cicer arietinum Ca_22534 I 0.000
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.000
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.000
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.000
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.000
Cla002268 Citrullus lanatus Cla002268 I 0.000
Cla015583 Citrullus lanatus Cla015583 I 0.000
Cla020000 Citrullus lanatus Cla020000 I 0.000
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.000
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.000
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.000
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.000
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.000
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.000
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.000
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.000
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.000
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.000
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.000
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.000
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.000
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.000
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.000
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.000
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.000
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.000
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.000
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.000
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.000
GLYMA13G30990 Glycine max GLYMA13G30990 I 0.000
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.000
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.000
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.000
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.000
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I 0.000
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.000
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.000
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.000
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.000
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.000
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I 0.000
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I 0.000
GRMZM2G310368 Zea mays GRMZM2G310368 I 0.000
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.000
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.000
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.000
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.000
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.000
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.000
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.000
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.000
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.000
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.000
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.000
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.000
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.000
LPERR05G17480 Leersia perrieri LPERR05G17480 I 0.000
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.000
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.000
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.000
MDP0000264187 Malus domestica MDP0000264187 I 0.000
mgf019214m Mimulus guttatus mgf019214m I 0.000
mgf023662m Mimulus guttatus mgf023662m I 0.000
MLOC_24530 Hordeum vulgare MLOC_24530 I 0.000
MLOC_73358 Hordeum vulgare MLOC_73358 I 0.000
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.000
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.000
OB01G42720 Oryza brachyantha OB01G42720 I 0.000
OBART01G33870 Oryza barthii OBART01G33870 I 0.000
OBART05G21580 Oryza barthii OBART05G21580 I 0.000
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.000
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I 0.000
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.000
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.000
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.000
OMERI05G19490 Oryza meridionalis OMERI05G19490 I 0.000
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.000
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.000
ONIVA05G22270 Oryza nivara ONIVA05G22270 I 0.000
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.000
OPUNC05G19230 Oryza punctata OPUNC05G19230 I 0.000
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.000
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.000
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.000
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.000
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I 0.000
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.000
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.000
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I 0.000
OS01G0797600 Oryza sativa OS01G0797600 I 0.000
OS05G0316800 Oryza sativa OS05G0316800 N 0.000
OS05G0497300 Oryza sativa OS05G0497300 I 0.000
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I 0.000
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.000
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.000
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I 0.000
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.000
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I 0.000
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.000
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.000
Pavir.J14354 Panicum virgatum Pavir.J14354 I 0.000
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.000
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.000
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.000
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I 0.000
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.000
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.000
PK02602.1 Cannabis sativa PK02602.1 I 0.000
PK19363.1 Cannabis sativa PK19363.1 D 0.000
Pm011391 Prunus mume Pm011391 I 0.000
Pm013734 Prunus mume Pm013734 I 0.000
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.000
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.000
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I 0.000
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.000
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.000
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.000
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.000
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.000
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.000
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I 0.000
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I 0.000
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I 0.000
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.000
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.000
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.000
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.000
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.000
Sb03g037080 Sorghum bicolor Sb03g037080 I 0.000
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.000
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.000
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.000
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.000
Si002729m.g Setaria italica Si002729m.g I 0.000
Si008428m.g Setaria italica Si008428m.g I 0.000
Si023088m.g Setaria italica Si023088m.g I 0.000
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.000
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.000
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I 0.000
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I 0.000
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.000
TCM_008162 Theobroma cacao TCM_008162 I 0.000
TCM_027348 Theobroma cacao TCM_027348 I 0.000
TCM_029820 Theobroma cacao TCM_029820 I 0.000
TCM_031608 Theobroma cacao TCM_031608 I 0.000
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.000
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.000
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.000
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.000
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.000
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.000
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I 0.000
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I 0.000
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.000