SIX6 (Gorilla gorilla)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGGOG00000008594 T210437_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGGOP00000008398 Homeodomain 148 204
ENSGGOP00000020564 Homeodomain 188 244

Links

Other Homeodomain family TFs
Other Gorilla gorilla TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.000
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.000
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.000
BRADI2G30695 Brachypodium distachyon BRADI2G30695 I 0.000
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I 0.000
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.000
F775_07376 Aegilops tauschii F775_07376 I 0.000
F775_32858 Aegilops tauschii F775_32858 I 0.000
GRMZM2G004060 Zea mays GRMZM2G004060 I 0.000
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.000
LPERR05G09130 Leersia perrieri LPERR05G09130 I 0.000
MLOC_66134 Hordeum vulgare MLOC_66134 I 0.000
OB03G26140 Oryza brachyantha OB03G26140 I 0.000
OB05G20210 Oryza brachyantha OB05G20210 N 0.000
OBART03G16400 Oryza barthii OBART03G16400 I 0.000
OBART05G11710 Oryza barthii OBART05G11710 I 0.000
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.000
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.000
OLONG_021882 Oryza longistaminata OLONG_021882 N 0.000
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.000
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.000
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.000
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.000
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.000
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.000
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.000
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.000
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.000
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.000
OS03G0335200 Oryza sativa OS03G0335200 I 0.000
OS05G0322900 Oryza sativa OS05G0322900 I 0.000
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I 0.000
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I 0.000
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.000
Sb08g005080 Sorghum bicolor Sb08g005080 I 0.000
Si022702m.g Setaria italica Si022702m.g I 0.000
Si036565m.g Setaria italica Si036565m.g I 0.000
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I 0.000
Traes_7BL_53AA25AA1 Triticum aestivum Traes_7BL_53AA25AA1 I 0.000
Traes_7DL_A9EF00572 Triticum aestivum Traes_7DL_A9EF00572 I 0.000
TRIUR3_04352 Triticum urartu TRIUR3_04352 I 0.000
TRIUR3_21738 Triticum urartu TRIUR3_21738 N 0.000