SIX2 (Gorilla gorilla)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGGOG00000008605 T210438_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 1.000
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 1.000
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 1.000
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 1.000
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 1.000
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 1.000
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 1.000
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.945
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.945
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.945
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.945
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.945
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.945
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.945
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.982
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGGOP00000008411 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Gorilla gorilla TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29915.m000469 Ricinus communis 29915.m000469 N 0.000
29917.m001969 Ricinus communis 29917.m001969 N 0.000
29976.m000497 Ricinus communis 29976.m000497 N 0.000
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N 0.000
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N 0.000
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N 0.000
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N 0.000
VAL1 Arabidopsis thaliana AT2G30470 N 0.000
VAL2 Arabidopsis thaliana AT4G32010 N 0.000
BGIOSGA023709 Oryza indica BGIOSGA023709 N 0.000
BGIOSGA025947 Oryza indica BGIOSGA025947 N 0.000
Bo1g024250 Brassica oleracea Bo1g024250 N 0.000
Bo3g024640 Brassica oleracea Bo3g024640 N 0.000
Bo4g058460 Brassica oleracea Bo4g058460 N 0.000
Bo4g173060 Brassica oleracea Bo4g173060 N 0.000
Bo7g115560 Brassica oleracea Bo7g115560 N 0.000
Bo7g115570 Brassica oleracea Bo7g115570 N 0.000
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N 0.000
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N 0.000
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N 0.000
Bra013535 Brassica rapa Bra013535 N 0.000
Bra018313 Brassica rapa Bra018313 N 0.000
Bra021635 Brassica rapa Bra021635 N 0.000
Bra022801 Brassica rapa Bra022801 N 0.000
Bra023968 Brassica rapa Bra023968 N 0.000
BRADI1G17680 Brachypodium distachyon BRADI1G17680 N 0.000
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N 0.000
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N 0.000
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N 0.000
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N 0.000
Carubv10004192m.g Capsella rubella Carubv10004192m.g N 0.000
Carubv10004194m.g Capsella rubella Carubv10004194m.g N 0.000
Carubv10022654m.g Capsella rubella Carubv10022654m.g N 0.000
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N 0.000
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N 0.000
cassava39646.m1 Manihot esculenta cassava39646.m1 N 0.000
cassava41301.m1 Manihot esculenta cassava41301.m1 N 0.000
Ca_00244 Cicer arietinum Ca_00244 N 0.000
Ca_08924 Cicer arietinum Ca_08924 N 0.000
Ca_15659 Cicer arietinum Ca_15659 N 0.000
Ca_23185 Cicer arietinum Ca_23185 N 0.000
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N 0.000
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N 0.000
Cla008225 Citrullus lanatus Cla008225 N 0.000
Cla018330 Citrullus lanatus Cla018330 N 0.000
Cucsa.045980 Cucumis sativus Cucsa.045980 N 0.000
Cucsa.111990 Cucumis sativus Cucsa.111990 N 0.000
Cucsa.177010 Cucumis sativus Cucsa.177010 N 0.000
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N 0.000
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N 0.000
Eucgr.E03467 Eucalyptus grandis Eucgr.E03467 N 0.000
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N 0.000
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N 0.000
evm.TU.supercontig_0.91 Carica papaya evm.TU.supercontig_0.91 N 0.000
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N 0.000
F775_30051 Aegilops tauschii F775_30051 N 0.000
F775_32613 Aegilops tauschii F775_32613 N 0.000
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N 0.000
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N 0.000
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N 0.000
GLYMA01G32810 Glycine max GLYMA01G32810 N 0.000
GLYMA02G40280 Glycine max GLYMA02G40280 N 0.000
GLYMA03G04330 Glycine max GLYMA03G04330 N 0.000
GLYMA11G31234 Glycine max GLYMA11G31234 N 0.000
GLYMA13G31970 Glycine max GLYMA13G31970 N 0.000
GLYMA14G38492 Glycine max GLYMA14G38492 N 0.000
GLYMA15G07350 Glycine max GLYMA15G07350 N 0.000
GLYMA18G05840 Glycine max GLYMA18G05840 N 0.000
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N 0.000
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N 0.000
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N 0.000
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N 0.000
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N 0.000
GRMZM2G008356 Zea mays GRMZM2G008356 N 0.000
GRMZM2G158162 Zea mays GRMZM2G158162 N 0.000
GRMZM2G172621 Zea mays GRMZM2G172621 N 0.000
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N 0.000
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N 0.000
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N 0.000
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N 0.000
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N 0.000
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N 0.000
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N 0.000
LPERR07G16110 Leersia perrieri LPERR07G16110 N 0.000
LPERR07G23240 Leersia perrieri LPERR07G23240 N 0.000
Lus10018440.g Linum usitatissimum Lus10018440.g N 0.000
Lus10022741.g Linum usitatissimum Lus10022741.g N 0.000
Lus10025142.g Linum usitatissimum Lus10025142.g N 0.000
Lus10025226.g Linum usitatissimum Lus10025226.g N 0.000
MDP0000127640 Malus domestica MDP0000127640 N 0.000
MDP0000229344 Malus domestica MDP0000229344 N 0.000
MDP0000267885 Malus domestica MDP0000267885 N 0.000
MDP0000274788 Malus domestica MDP0000274788 N 0.000
mgf007363m Mimulus guttatus mgf007363m N 0.000
mgf007846m Mimulus guttatus mgf007846m N 0.000
mgf013365m Mimulus guttatus mgf013365m N 0.000
mgf024907m Mimulus guttatus mgf024907m N 0.000
MLOC_36861 Hordeum vulgare MLOC_36861 N 0.000
MLOC_4657 Hordeum vulgare MLOC_4657 N 0.000
MTR_2g011940 Medicago truncatula MTR_2g011940 N 0.000
MTR_3g467380 Medicago truncatula MTR_3g467380 N 0.000
MTR_4g028130 Medicago truncatula MTR_4g028130 N 0.000
MTR_5g075410 Medicago truncatula MTR_5g075410 N 0.000
OB07G31850 Oryza brachyantha OB07G31850 N 0.000
OBART07G18780 Oryza barthii OBART07G18780 N 0.000
OBART07G26400 Oryza barthii OBART07G26400 N 0.000
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N 0.000
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N 0.000
OLONG_008212 Oryza longistaminata OLONG_008212 N 0.000
OLONG_013183 Oryza longistaminata OLONG_013183 N 0.000
OMERI07G15550 Oryza meridionalis OMERI07G15550 N 0.000
OMERI07G23020 Oryza meridionalis OMERI07G23020 N 0.000
ONIVA07G17160 Oryza nivara ONIVA07G17160 N 0.000
ONIVA07G26110 Oryza nivara ONIVA07G26110 N 0.000
OPUNC07G17640 Oryza punctata OPUNC07G17640 N 0.000
OPUNC07G24850 Oryza punctata OPUNC07G24850 N 0.000
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N 0.000
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N 0.000
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N 0.000
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N 0.000
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N 0.000
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N 0.000
OS07G0563350 Oryza sativa OS07G0563350 N 0.000
OS07G0679700 Oryza sativa OS07G0679700 N 0.000
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N 0.000
Pavir.Ba00654 Panicum virgatum Pavir.Ba00654 N 0.000
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N 0.000
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N 0.000
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N 0.000
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N 0.000
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N 0.000
PK04158.1 Cannabis sativa PK04158.1 N 0.000
PK09020.1 Cannabis sativa PK09020.1 N 0.000
PK13763.1 Cannabis sativa PK13763.1 N 0.000
Pm000247 Prunus mume Pm000247 N 0.000
Pm003031 Prunus mume Pm003031 N 0.000
Pm009906 Prunus mume Pm009906 N 0.000
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N 0.000
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N 0.000
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N 0.000
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N 0.000
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N 0.000
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N 0.000
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N 0.000
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N 0.000
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N 0.000
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N 0.000
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N 0.000
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N 0.000
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N 0.000
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N 0.000
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N 0.000
Sb02g036430 Sorghum bicolor Sb02g036430 N 0.000
Sb02g043000 Sorghum bicolor Sb02g043000 N 0.000
HSI2 Arabidopsis lyrata scaffold_401535.1 N 0.000
HSL1 Arabidopsis lyrata scaffold_700997.1 N 0.000
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N 0.000
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N 0.000
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N 0.000
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N 0.000
Si028829m.g Setaria italica Si028829m.g N 0.000
Si028834m.g Setaria italica Si028834m.g N 0.000
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N 0.000
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N 0.000
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N 0.000
TCM_019701 Theobroma cacao TCM_019701 N 0.000
TCM_029976 Theobroma cacao TCM_029976 N 0.000
TCM_042290 Theobroma cacao TCM_042290 N 0.000
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N 0.000
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N 0.000
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N 0.000
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N 0.000
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N 0.000
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N 0.000
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N 0.000
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N 0.000
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N 0.000
TRIUR3_04238 Triticum urartu TRIUR3_04238 N 0.000
VAL3 Vitis vinifera VIT_00s0181g00260 N 0.000
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N 0.000
HSL1 Vitis vinifera VIT_08s0058g01300 N 0.000