CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HOXA13 *(Monodelphis domestica)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSMODG00000000449	T212041_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.867	1.000
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.867	1.000
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.867	1.000
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.867	1.000
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.867	1.000
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.867	1.000
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.867	1.000
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.867	1.000
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.867	1.000
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.867	1.000
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.867	1.000
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.867	1.000
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.867	1.000
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.867	1.000
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.867	1.000
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.862	0.930
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.862	0.930
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.862	0.930
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.862	0.930
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.862	0.930
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.862	0.930
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.862	0.930
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.836	0.842
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.834	0.895
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.834	0.895
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.834	0.895
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.834	0.895
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.834	0.895
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.834	0.895
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.834	0.895
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.834	0.895
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.834	0.895
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.834	0.895
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.834	0.895
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.834	0.895
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.834	0.877
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.834	0.877
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.826	0.877
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.816	0.877
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.709	0.842
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.709	0.842
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.709	0.842
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.709	0.842
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.709	0.842
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.709	0.842
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.709	0.842
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.709	0.842
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.611	0.544
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.611	0.544
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.611	0.544
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.611	0.544
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.611	0.544
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.611	0.544
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.611	0.544
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.611	0.544
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.611	0.544
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.611	0.544
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.611	0.544
HOXD13 M00296_2.00	Homo sapiens	GKATAAAH	DTTTATMC	PBM Barrera et al.(2016) HOXD13_Q325K	0.601	0.877
HOXD13 M00297_2.00	Homo sapiens	NWTWRKNNNN	NNNNMYWAWN	PBM Barrera et al.(2016) HOXD13_Q325R	0.601	0.877
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSMODP00000000533	Homeodomain	334	390	RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK

Links
Other Homeodomain family TFs
Other *Monodelphis domestica* TFs

275 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AB00853.1	Alternaria brassicicola	AB00853.1	N
AUEXF2481DRAFT_3008	Aureobasidium subglaciale	AUEXF2481DRAFT_3008	N
Bcin05g08120	Botrytis cinerea	Bcin05g08120	N
BDDG_01982	Blastomyces dermatitidis	BDDG_01982	N
ACLA_030900	Aspergillus clavatus	CADACLAG00003026	N
CADAFLAG00002223	Aspergillus flavus	CADAFLAG00002223	N
AFUA_1G03710	Aspergillus fumigatus	CADAFUAG00009026	N
CADANGAG00014038	Aspergillus niger	CADANGAG00014038	N
ANIA_04021	Aspergillus nidulans	CADANIAG00004663	N
ATEG_03838	Aspergillus terreus	CADATEAG00008913	N
NFIA_020960	Neosartorya fischeri	CADNFIAG00002119	N
COCC4DRAFT_55162	Bipolaris maydis	COCC4DRAFT_55162	N
COCCADRAFT_34523	Bipolaris zeicola	COCCADRAFT_34523	N
COCMIDRAFT_106480	Bipolaris oryzae	COCMIDRAFT_106480	N
COCSADRAFT_210469	Bipolaris sorokiniana	COCSADRAFT_210469	N
COCVIDRAFT_21644	Bipolaris victoriae	COCVIDRAFT_21644	N
estExt_fgenesh1_pg.C_20466	Cochliobolus heterostrophus C5	estExt_fgenesh1_pg.C_20466	N
EURHEDRAFT_457871	Aspergillus ruber	EURHEDRAFT_457871	N
EV44_g6245	Erysiphe necator	EV44_g6245	N
fgenesh1_pg.00129_#_179	Aspergillus carbonarius	fgenesh1_pg.00129_#_179	N
GMDG_06748	Pseudogymnoascus destructans	GMDG_06748	N
H101_04716	Trichophyton interdigitale	H101_04716	N
H102_03391	Trichophyton rubrum	H102_03391	N
H105_03409	Trichophyton soudanense	H105_03409	N
HCBG_00525	Histoplasma capsulatum	HCBG_00525	N
LEMA_P067460.1	Leptosphaeria maculans	LEMA_P067460.1	N
M437DRAFT_40354	Aureobasidium melanogenum	M437DRAFT_40354	N
M438DRAFT_352021	Aureobasidium pullulans	M438DRAFT_352021	N
MBM_03839	Marssonina brunnea	MBM_03839	N
MCYG_05803	Microsporum canis	MCYG_05803	N
MGYG_02906	Microsporum gypseum	MGYG_02906	N
OIDMADRAFT_168022	Oidiodendron maius	OIDMADRAFT_168022	N
PAAG_05759	Paracoccidioides sp lutzii	PAAG_05759	N
PMAA_055260	Penicillium marneffei	PMAA_055260	N
PMAA_055260	Talaromyces marneffei	PMAA_055260	N
PTRG_10615	Pyrenophora triticirepentis	PTRG_10615	N
PTT_14132	Pyrenophora teres	PTT_14132	N
PV09_00027	Verruconis gallopava	PV09_00027	N
SBOR_6873	Sclerotinia borealis	SBOR_6873	N
SETTUDRAFT_162780	Setosphaeria turcica	SETTUDRAFT_162780	N
SNOG_00063	Phaeosphaeria nodorum	SNOG_00063	N
SNOG_00063	Stagonospora nodorum	SNOG_00063	N
SS1G_12081	Sclerotinia sclerotiorum	SS1G_12081	N
TEQG_00827	Trichophyton equinum	TEQG_00827	N
TESG_04726	Trichophyton tonsurans	TESG_04726	N
TSTA_017610	Talaromyces stipitatus	TSTA_017610	N
UREG_01812	Uncinocarpus reesii	UREG_01812	N
V499_07705	Pseudogymnoascus pannorum	V499_07705	N
W97_06537	Coniosporium apollinis	W97_06537	N

HOXA13 (Monodelphis domestica) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

275 Related TFs

HOXA13 **(Monodelphis domestica)
Homeodomain**