Irx4 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000012720 T215398_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000016975 Homeodomain 145 203

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_04210 Capronia coronata A1O1_04210 I 0.000
A1O3_01208 Capronia epimyces A1O3_01208 I 0.000
A1O7_02237 Cladophialophora yegresii A1O7_02237 I 0.000
ACRE_005470 Acremonium chrysogenum ACRE_005470 I 0.000
ARB_02172 Arthroderma benhamiae ARB_02172 I 0.000
BAUCODRAFT_276951 Baudoinia compniacensis BAUCODRAFT_276951 N 0.000
BBA_07483 Beauveria bassiana BBA_07483 N 0.000
BDDG_03512 Blastomyces dermatitidis BDDG_03512 I 0.000
CCM_08924 Cordyceps militaris CCM_08924 N 0.000
CHGG_10488 Chaetomium globosum CHGG_10488 N 0.000
DOTSEDRAFT_69470 Dothistroma septosporum DOTSEDRAFT_69470 N 0.000
estExt_fgenesh1_pg.C_160018 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_160018 N 0.000
fgeneshMC_pg.4_#_1012 Mucor circinelloides fgeneshMC_pg.4_#_1012 N 0.000
fgeneshMC_pg.5_#_674 Mucor circinelloides fgeneshMC_pg.5_#_674 I 0.000
FOMPIDRAFT_73073 Fomitopsis pinicola FOMPIDRAFT_73073 N 0.000
G647_08748 Cladophialophora carrionii G647_08748 I 0.000
H101_07555 Trichophyton interdigitale H101_07555 I 0.000
H102_00527 Trichophyton rubrum H102_00527 I 0.000
H105_00515 Trichophyton soudanense H105_00515 I 0.000
HCBG_01276 Histoplasma capsulatum HCBG_01276 I 0.000
HMPREF1120_08360 Exophiala dermatitidis HMPREF1120_08360 I 0.000
HMPREF1541_00486 Cyphellophora europaea HMPREF1541_00486 I 0.000
MCYG_00012 Microsporum canis MCYG_00012 I 0.000
MCYG_00012 Arthroderma otae MCYG_00012 I 0.000
MGYG_07213 Microsporum gypseum MGYG_07213 I 0.000
MPH_10251 Macrophomina phaseolina MPH_10251 I 0.000
MYCTH_2316740 Myceliophthora thermophila MYCTH_2316740 N 0.000
PAAG_12580 Paracoccidioides sp lutzii PAAG_12580 I 0.000
PABG_06099 Paracoccidioides brasiliensis PABG_06099 I 0.000
PV04_02419 Capronia semiimmersa PV04_02419 I 0.000
PV07_02787 Cladophialophora immunda PV07_02787 I 0.000
RO3G_15999 Rhizopus oryzae RO3G_15999 N 0.000
SEPMUDRAFT_146995 Sphaerulina musiva SEPMUDRAFT_146995 N 0.000
TEQG_08786 Trichophyton equinum TEQG_08786 I 0.000
TRV_00423 Trichophyton verrucosum TRV_00423 I 0.000
UCRNP2_8340 Neofusicoccum parvum UCRNP2_8340 I 0.000
VHEMI01778 Torrubiella hemipterigena VHEMI01778 N 0.000
W97_09232 Coniosporium apollinis W97_09232 N 0.000
Z517_00401 Fonsecaea pedrosoi Z517_00401 I 0.000
Z518_01931 Rhinocladiella mackenziei Z518_01931 I 0.000
Z519_11346 Cladophialophora bantiana Z519_11346 I 0.000