Irx2 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000012742 T215400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.867 1.000
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.867 1.000
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.867 1.000
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.867 1.000
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.867 1.000
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.867 1.000
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.815 0.930
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.815 0.930
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.815 0.930
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.780 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000017019 Homeodomain 116 175

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30137.m000436 Ricinus communis 30137.m000436 I 0.000
ATMYB54 Arabidopsis lyrata Al_scaffold_0002_2037 I 0.000
ATMYB54 Arabidopsis thaliana AT1G73410 I 0.000
ATMYB69 Arabidopsis thaliana AT4G33450 I 0.000
Bo1g008140 Brassica oleracea Bo1g008140 I 0.000
Bo2g080540 Brassica oleracea Bo2g080540 I 0.000
Bo6g116800 Brassica oleracea Bo6g116800 I 0.000
Bo7g116160 Brassica oleracea Bo7g116160 I 0.000
Bostr.10273s0016 Boechera stricta Bostr.10273s0016 I 0.000
Bra008096 Brassica rapa Bra008096 I 0.000
Bra011441 Brassica rapa Bra011441 I 0.000
Bra015992 Brassica rapa Bra015992 I 0.000
Cagra.0844s0037 Capsella grandiflora Cagra.0844s0037 I 0.000
Cagra.4894s0009 Capsella grandiflora Cagra.4894s0009 I 0.000
Carubv10006783m.g Capsella rubella Carubv10006783m.g I 0.000
Carubv10021434m.g Capsella rubella Carubv10021434m.g I 0.000
cassava5849.m1 Manihot esculenta cassava5849.m1 I 0.000
ATMYB69 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000654 I 0.000
PDK_20s1366461g001 Phoenix dactylifera PDK_20s1366461g001 I 0.000
POPTR_0005s06410 Populus trichocarpa POPTR_0005s06410 I 0.000
POPTR_0007s04140 Populus trichocarpa POPTR_0007s04140 I 0.000
SapurV1A.0171s0440 Salix purpurea SapurV1A.0171s0440 I 0.000
SapurV1A.0916s0130 Salix purpurea SapurV1A.0916s0130 I 0.000
SapurV1A.1092s0010 Salix purpurea SapurV1A.1092s0010 I 0.000
TCM_001496 Theobroma cacao TCM_001496 I 0.000
Thhalv10008597m.g Eutrema salsugineum Thhalv10008597m.g I 0.000
Thhalv10019669m.g Eutrema salsugineum Thhalv10019669m.g I 0.000
ATMYB69 Vitis vinifera VIT_04s0044g01380 I 0.000