SIX6 (Tupaia belangeri)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTBEG00000017196 T216211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000014940 Homeodomain 187 243

Links

Other Homeodomain family TFs
Other Tupaia belangeri TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29708.m000185 Ricinus communis 29708.m000185 I 0.000
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.000
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.000
EIL1 Arabidopsis thaliana AT2G27050 D 0.000
EIN3 Arabidopsis thaliana AT3G20770 D 0.000
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.000
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.000
Bo1g108650 Brassica oleracea Bo1g108650 I 0.000
Bo3g041690 Brassica oleracea Bo3g041690 I 0.000
Bo3g076180 Brassica oleracea Bo3g076180 I 0.000
Bo5g106280 Brassica oleracea Bo5g106280 I 0.000
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.000
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.000
Bra000528 Brassica rapa Bra000528 I 0.000
Bra001802 Brassica rapa Bra001802 I 0.000
Bra035746 Brassica rapa Bra035746 I 0.000
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.000
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.000
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.000
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.000
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.000
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.000
Ca_07534 Cicer arietinum Ca_07534 I 0.000
Ca_10236 Cicer arietinum Ca_10236 I 0.000
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.000
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.000
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.000
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.000
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.000
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.000
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.000
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.000
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.000
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.000
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.000
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.000
F775_28545 Aegilops tauschii F775_28545 I 0.000
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.000
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.000
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.000
gene00392-v1.0-hybrid Fragaria vesca gene00392-v1.0-hybrid I 0.000
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.000
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.000
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.000
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.000
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.000
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.000
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.000
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.000
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.000
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.000
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.000
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.000
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.000
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.000
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.000
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.000
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.000
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.000
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.000
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.000
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.000
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.000
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.000
LjSGA_055593.1 Lotus japonicus LjSGA_055593.1 I 0.000
LjSGA_067101.1 Lotus japonicus LjSGA_067101.1 I 0.000
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.000
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.000
MDP0000202831 Malus domestica MDP0000202831 I 0.000
MDP0000212881 Malus domestica MDP0000212881 I 0.000
MDP0000306498 Malus domestica MDP0000306498 I 0.000
MDP0000564884 Malus domestica MDP0000564884 I 0.000
mgf012394m Mimulus guttatus mgf012394m I 0.000
mgf015996m Mimulus guttatus mgf015996m I 0.000
mgf018950m Mimulus guttatus mgf018950m I 0.000
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.000
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.000
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.000
OB07G32250 Oryza brachyantha OB07G32250 I 0.000
OBART07G26760 Oryza barthii OBART07G26760 I 0.000
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.000
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.000
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.000
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.000
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.000
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.000
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.000
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.000
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.000
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.000
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.000
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.000
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.000
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.000
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.000
OS02G0689132 Oryza sativa OS02G0689132 I 0.000
OS03G0324200 Oryza sativa OS03G0324200 I 0.000
OS03G0324300 Oryza sativa OS03G0324300 I 0.000
OS07G0685700 Oryza sativa OS07G0685700 I 0.000
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.000
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.000
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.000
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.000
PDK_20s1443543g001 Phoenix dactylifera PDK_20s1443543g001 I 0.000
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.000
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.000
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.000
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.000
PK01239.1 Cannabis sativa PK01239.1 I 0.000
PK13351.1 Cannabis sativa PK13351.1 I 0.000
Pm017009 Prunus mume Pm017009 I 0.000
Pm017011 Prunus mume Pm017011 I 0.000
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.000
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.000
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.000
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.000
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.000
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.000
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.000
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.000
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.000
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.000
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.000
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.000
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.000
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.000
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.000
SELMODRAFT_419770 Selaginella moellendorffii SELMODRAFT_419770 I 0.000
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.000
Si029213m.g Setaria italica Si029213m.g I 0.000
Si034616m.g Setaria italica Si034616m.g I 0.000
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.000
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.000
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.000
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.000
TCM_042022 Theobroma cacao TCM_042022 I 0.000
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.000
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.000
Traes_2AS_409CAEDB6 Triticum aestivum Traes_2AS_409CAEDB6 I 0.000
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.000
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.000
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.000
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.000
TRIUR3_30860 Triticum urartu TRIUR3_30860 I 0.000
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.000
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.000