pbx1b (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000006548 T216446_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.982
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.982
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.982
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.982
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.982
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.982
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.982
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.982
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.982
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.982
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.982
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.982
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.982
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.982
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.965
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.947
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.947
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.947
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.930
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.930
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.930
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.930
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.930
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.860
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.860
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000009321 Homeodomain 126 185

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0001090601 Angiostrongylus costaricensis ACOC_0001090601 N
ACUA011690 Anopheles culicifacies ACUA011690 N
AGAP000061 Anopheles gambiae AGAP000061 I
ANCCAN_18993 Ancylostoma caninum ANCCAN_18993 N
ANCCEY_09797 Ancylostoma ceylanicum ANCCEY_09797 N
ANCDUO_16051 Ancylostoma duodenale ANCDUO_16051 N
BGIBMGA013353 Bombyx mori BGIBMGA013353 N
CLEC007920 Cimex lectularius CLEC007920 N
D915_04001 Fasciola hepatica D915_04001 N
D917_03504 Trichinella nativa D917_03504 N
D918_08254 Trichuris suis D918_08254 N
DILT_0001945601 Diphyllobothrium latum DILT_0001945601 N
ECPE_0000369101 Echinostoma caproni ECPE_0000369101 N
EFV55311 Trichinella spiralis EFV55311 N
EVEC_0000948201 Enterobius vermicularis EVEC_0000948201 N
GD24376 Drosophila simulans FBgn0195717 N
GPUH_0001951401 Gongylonema pulchrum GPUH_0001951401 N
Hba_06475 Heterorhabditis bacteriophora Hba_06475 N
HHAL003723-PA Halyomorpha halys HHAL003723-PA N
HPLM_0000364001 Haemonchus placei HPLM_0000364001 N
ISCW015628 Ixodes scapularis ISCW015628 N
L889_g23716 Steinernema feltiae L889_g23716 I
L892_g9685 Steinernema scapterisci L892_g9685 N
L898_g28854 Steinernema monticolum L898_g28854 I
LCUP017328 Lucilia cuprina LCUP017328 N
LDEC016076 Leptinotarsa decemlineata LDEC016076 N
MCINX014974 Melitaea cinxia MCINX014974 N
MCOS_0000769501 Mesocestoides corti MCOS_0000769501 N
NBR_0001501501 Nippostrongylus brasiliensis NBR_0001501501 N
nDi.2.2.2.g10834 Dirofilaria immitis nDi.2.2.2.g10834 N
NECAME_16148 Necator americanus NECAME_16148 N
OESDEN_04593 Oesophagostomum dentatum OESDEN_04593 N
PPA07282 Pristionchus pacificus PPA07282 N
RPRC001057 Rhodnius prolixus RPRC001057 N
scaffold144-EXSNAP2012.47 Pristionchus exspectatus scaffold144-EXSNAP2012.47 N
SMUV_0001096901 Syphacia muris SMUV_0001096901 N
WUBG_15276 Wuchereria bancrofti WUBG_15276 N