GM21001 (Drosophila sechellia)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0175882 T218057_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 1.000
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 1.000
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 1.000
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 1.000
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0202478 Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Drosophila sechellia TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.000
AGL27 Arabidopsis thaliana AT1G77080 D 0.000
FLC Arabidopsis thaliana AT5G10140 D 0.000
AGL31 Arabidopsis thaliana AT5G65050 I 0.000
MAF3 Arabidopsis thaliana AT5G65060 I 0.000
MAF4 Arabidopsis thaliana AT5G65070 I 0.000
MAF5 Arabidopsis thaliana AT5G65080 I 0.000
Bo01054s010 Brassica oleracea Bo01054s010 I 0.000
Bo03856s010 Brassica oleracea Bo03856s010 I 0.000
Bo13628s010 Brassica oleracea Bo13628s010 I 0.000
Bo2g166500 Brassica oleracea Bo2g166500 I 0.000
Bo3g005470 Brassica oleracea Bo3g005470 I 0.000
Bo3g024250 Brassica oleracea Bo3g024250 I 0.000
Bo3g100540 Brassica oleracea Bo3g100540 I 0.000
Bo3g100570 Brassica oleracea Bo3g100570 I 0.000
Bo9g173370 Brassica oleracea Bo9g173370 I 0.000
Bo9g173400 Brassica oleracea Bo9g173400 I 0.000
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.000
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.000
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.000
Bra006051 Brassica rapa Bra006051 I 0.000
Bra009055 Brassica rapa Bra009055 I 0.000
Bra022771 Brassica rapa Bra022771 I 0.000
Bra024350 Brassica rapa Bra024350 I 0.000
Bra024351 Brassica rapa Bra024351 I 0.000
Bra028599 Brassica rapa Bra028599 I 0.000
Bra031884 Brassica rapa Bra031884 I 0.000
Bra031886 Brassica rapa Bra031886 I 0.000
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.000
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.000
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.000
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.000
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.000
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.000
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.000
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.000
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.000
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.000
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.000
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.000
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.000
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.000
FLC Arabidopsis lyrata scaffold_601028.1 I 0.000
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.000
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.000
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.000