GM25358 (Drosophila sechellia)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0180216 T218075_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.867 1.000
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.867 1.000
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.867 1.000
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.858 0.947
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.858 0.947
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.858 0.947
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.824 0.895
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.806 0.877
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.806 0.877
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.806 0.877
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.806 0.877
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.806 0.877
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.780 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0206835 Homeodomain 227 286

Links

Other Homeodomain family TFs
Other Drosophila sechellia TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_170712 Phytophthora capsici estExt_fgenesh1_kg.C_170712 N 0.000
estExt_fgenesh1_pg.C_90307 Micromonas pusilla estExt_fgenesh1_pg.C_90307 N 0.000
F443_04726 Phytophthora parasitica F443_04726 N 0.000
fgenesh-par_contig_48-abinit-gene-0.93 Pythium arrhenomanes fgenesh-par_contig_48-abinit-gene-0.93 N 0.000
fgenesh_scip_prom.28083.7384 Phytophthora lateralis fgenesh_scip_prom.28083.7384 N 0.000
fgenesh_scip_prom.46568.4988 Phytophthora kernoviae fgenesh_scip_prom.46568.4988 N 0.000
maker-pag1_scaffold_223-snap-gene-0.15 Pythium aphanidermatum maker-pag1_scaffold_223-snap-gene-0.15 N 0.000
maker-pag1_scaffold_73-snap-gene-0.36 Pythium aphanidermatum maker-pag1_scaffold_73-snap-gene-0.36 N 0.000
maker-pir_contig_839-snap-gene-0.7 Pythium irregulare maker-pir_contig_839-snap-gene-0.7 N 0.000
maker-pve_contig_301-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.3 N 0.000
Phyra85853 Phytophthora ramorum Phyra85853 N 0.000
Phyra85854 Phytophthora ramorum Phyra85854 N 0.000
Physo128590 Phytophthora sojae Physo128590 N 0.000
PITG_17391 Phytophthora infestans PITG_17391 N 0.000
PYU1_G006823 Pythium ultimum PYU1_G006823 I 0.000
PYU1_G006824 Pythium ultimum PYU1_G006824 N 0.000