OBART01G31750 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART01G31750 T221298_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.772 0.684
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.772 0.684
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.772 0.684
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.746 0.596
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.746 0.596
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.746 0.596
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.746 0.596
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.744 0.649
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.744 0.649
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.744 0.649
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.740 0.614
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.740 0.614
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.732 0.579
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.710 0.561
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.710 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G31750.1 Homeodomain 96 152

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

604 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28095.m000094 Ricinus communis 28095.m000094 N 0.000
AMTR_s00152p00031760 Amborella trichopoda AMTR_s00152p00031760 N 0.000
Aquca_075_00033 Aquilegia coerulea Aquca_075_00033 N 0.000
BZIP23 Arabidopsis thaliana AT2G16770 N 0.000
BZIP19 Arabidopsis thaliana AT4G35040 N 0.000
BGIOSGA004628 Oryza indica BGIOSGA004628 N 0.000
BGIOSGA017801 Oryza indica BGIOSGA017801 N 0.000
BGIOSGA034759 Oryza indica BGIOSGA034759 N 0.000
BGIOSGA036957 Oryza indica BGIOSGA036957 N 0.000
Bo1g006780 Brassica oleracea Bo1g006780 N 0.000
Bo3g091670 Brassica oleracea Bo3g091670 N 0.000
Bo3g167300 Brassica oleracea Bo3g167300 N 0.000
Bo9g024230 Brassica oleracea Bo9g024230 N 0.000
Bostr.18351s0138 Boechera stricta Bostr.18351s0138 N 0.000
Bostr.7867s1363 Boechera stricta Bostr.7867s1363 N 0.000
Bra011580 Brassica rapa Bra011580 N 0.000
Bra013048 Brassica rapa Bra013048 N 0.000
Bra034668 Brassica rapa Bra034668 N 0.000
BRADI2G21197 Brachypodium distachyon BRADI2G21197 N 0.000
BRADI2G52590 Brachypodium distachyon BRADI2G52590 N 0.000
Cagra.0839s0005 Capsella grandiflora Cagra.0839s0005 N 0.000
Cagra.2350s0050 Capsella grandiflora Cagra.2350s0050 N 0.000
Carubv10005538m.g Capsella rubella Carubv10005538m.g N 0.000
Carubv10014436m.g Capsella rubella Carubv10014436m.g N 0.000
cassava766.valid.m1 Manihot esculenta cassava766.valid.m1 N 0.000
cassava767.valid.m1 Manihot esculenta cassava767.valid.m1 N 0.000
cassava7721.valid.m1 Manihot esculenta cassava7721.valid.m1 N 0.000
Ciclev10028931m.g Citrus clementina Ciclev10028931m.g N 0.000
Cla016078 Citrullus lanatus Cla016078 N 0.000
Cla020585 Citrullus lanatus Cla020585 N 0.000
Cucsa.234250 Cucumis sativus Cucsa.234250 N 0.000
Cucsa.370550 Cucumis sativus Cucsa.370550 N 0.000
Eucgr.I01416 Eucalyptus grandis Eucgr.I01416 N 0.000
evm.TU.supercontig_37.136 Carica papaya evm.TU.supercontig_37.136 N 0.000
F775_16738 Aegilops tauschii F775_16738 N 0.000
F775_17323 Aegilops tauschii F775_17323 N 0.000
gene07554-v1.0-hybrid Fragaria vesca gene07554-v1.0-hybrid N 0.000
GLYMA11G16050 Glycine max GLYMA11G16050 N 0.000
GRMZM2G033230 Zea mays GRMZM2G033230 N 0.000
GRMZM2G175870 Zea mays GRMZM2G175870 N 0.000
GSMUA_Achr4G00320_001 Musa acuminata GSMUA_Achr4G00320_001 N 0.000
GSMUA_Achr4G10150_001 Musa acuminata GSMUA_Achr4G10150_001 N 0.000
GSMUA_Achr7G03840_001 Musa acuminata GSMUA_Achr7G03840_001 N 0.000
gw1.34.187.1 Physcomitrella patens gw1.34.187.1 N 0.000
LPERR01G29490 Leersia perrieri LPERR01G29490 N 0.000
LPERR05G17340 Leersia perrieri LPERR05G17340 N 0.000
LPERR11G02130 Leersia perrieri LPERR11G02130 N 0.000
LPERR12G02240 Leersia perrieri LPERR12G02240 N 0.000
Lus10005073.g Linum usitatissimum Lus10005073.g N 0.000
Lus10014121.g Linum usitatissimum Lus10014121.g N 0.000
Lus10016368.g Linum usitatissimum Lus10016368.g N 0.000
Lus10027847.g Linum usitatissimum Lus10027847.g N 0.000
MDP0000190186 Malus domestica MDP0000190186 N 0.000
MDP0000893802 Malus domestica MDP0000893802 N 0.000
MDP0000898701 Malus domestica MDP0000898701 N 0.000
mgf003848m Mimulus guttatus mgf003848m N 0.000
MLOC_13410 Hordeum vulgare MLOC_13410 N 0.000
MLOC_5655 Hordeum vulgare MLOC_5655 N 0.000
OB0044G10110 Oryza brachyantha OB0044G10110 N 0.000
OB01G42980 Oryza brachyantha OB01G42980 N 0.000
OB05G28920 Oryza brachyantha OB05G28920 N 0.000
OB12G12480 Oryza brachyantha OB12G12480 N 0.000
OBART01G34150 Oryza barthii OBART01G34150 N 0.000
OBART05G21450 Oryza barthii OBART05G21450 N 0.000
OBART11G02390 Oryza barthii OBART11G02390 N 0.000
OBART12G02110 Oryza barthii OBART12G02110 N 0.000
OGLUM01G38420 Oryza glumaepatula OGLUM01G38420 N 0.000
OGLUM05G22660 Oryza glumaepatula OGLUM05G22660 N 0.000
OGLUM11G02090 Oryza glumaepatula OGLUM11G02090 N 0.000
OLONG_016758 Oryza longistaminata OLONG_016758 N 0.000
OMERI01G30960 Oryza meridionalis OMERI01G30960 N 0.000
OMERI12G01070 Oryza meridionalis OMERI12G01070 N 0.000
ONIVA01G38950 Oryza nivara ONIVA01G38950 N 0.000
ONIVA05G22130 Oryza nivara ONIVA05G22130 N 0.000
ONIVA11G02620 Oryza nivara ONIVA11G02620 N 0.000
OPUNC01G33180 Oryza punctata OPUNC01G33180 N 0.000
OPUNC05G19110 Oryza punctata OPUNC05G19110 N 0.000
OPUNC12G02170 Oryza punctata OPUNC12G02170 N 0.000
orange1.1g024365m.g Citrus sinensis orange1.1g024365m.g N 0.000
ORGLA01G0280700 Oryza glaberrima ORGLA01G0280700 N 0.000
ORGLA05G0186200 Oryza glaberrima ORGLA05G0186200 N 0.000
ORUFI01G37470 Oryza rufipogon ORUFI01G37470 N 0.000
ORUFI05G22690 Oryza rufipogon ORUFI05G22690 N 0.000
ORUFI12G02510 Oryza rufipogon ORUFI12G02510 N 0.000
OS01G0801901 Oryza sativa OS01G0801901 N 0.000
OS05G0495200 Oryza sativa OS05G0495200 N 0.000
OS11G0139500 Oryza sativa OS11G0139500 N 0.000
Pavir.Db00007 Panicum virgatum Pavir.Db00007 N 0.000
Pavir.Ea03172 Panicum virgatum Pavir.Ea03172 N 0.000
Pavir.Eb03174 Panicum virgatum Pavir.Eb03174 N 0.000
Pavir.J00911 Panicum virgatum Pavir.J00911 N 0.000
PDK_20s1365351g001 Phoenix dactylifera PDK_20s1365351g001 N 0.000
PDK_20s1623091g001 Phoenix dactylifera PDK_20s1623091g001 N 0.000
Pm016548 Prunus mume Pm016548 N 0.000
Pm020862 Prunus mume Pm020862 N 0.000
POPTR_0001s05750 Populus trichocarpa POPTR_0001s05750 N 0.000
POPTR_0003s20320 Populus trichocarpa POPTR_0003s20320 N 0.000
POPTR_0009s13730 Populus trichocarpa POPTR_0009s13730 N 0.000
PRUPE_ppa009913mg Prunus persica PRUPE_ppa009913mg N 0.000
SapurV1A.0009s0600 Salix purpurea SapurV1A.0009s0600 N 0.000
SapurV1A.0445s0220 Salix purpurea SapurV1A.0445s0220 N 0.000
SapurV1A.0923s0130 Salix purpurea SapurV1A.0923s0130 N 0.000
Sb03g037300 Sorghum bicolor Sb03g037300 N 0.000
Sb09g024290 Sorghum bicolor Sb09g024290 N 0.000
bZIP23 Arabidopsis lyrata scaffold_303970.1 N 0.000
bZIP19 Arabidopsis lyrata scaffold_700623.1 N 0.000
SELMODRAFT_409920 Selaginella moellendorffii SELMODRAFT_409920 N 0.000
SELMODRAFT_414462 Selaginella moellendorffii SELMODRAFT_414462 N 0.000
Si002893m.g Setaria italica Si002893m.g N 0.000
TCM_042360 Theobroma cacao TCM_042360 N 0.000
Thhalv10022810m.g Eutrema salsugineum Thhalv10022810m.g N 0.000
Thhalv10026007m.g Eutrema salsugineum Thhalv10026007m.g N 0.000
TRAES3BF086800020CFD_g Triticum aestivum TRAES3BF086800020CFD_g N 0.000
Traes_1AL_00A8A2030 Triticum aestivum Traes_1AL_00A8A2030 N 0.000
Traes_7AL_C7CF7087B Triticum aestivum Traes_7AL_C7CF7087B N 0.000
Traes_7DL_7DDA16622 Triticum aestivum Traes_7DL_7DDA16622 N 0.000
TRIUR3_01653 Triticum urartu TRIUR3_01653 N 0.000
TRIUR3_18393 Triticum urartu TRIUR3_18393 N 0.000
TRIUR3_21208 Triticum urartu TRIUR3_21208 N 0.000
TRIUR3_23486 Triticum urartu TRIUR3_23486 N 0.000
VIT_03s0038g02420 Vitis vinifera VIT_03s0038g02420 N 0.000
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N 0.000